Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0728.Seq
         (489 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.43 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   1.00 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.00 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   3.1  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   4.0  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 0.43
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 319 FICLLLYILRFEISNIIIFMYKMRNARAH 405
           F C++  +    +S I+I  Y  RNA  H
Sbjct: 298 FNCIMFMVASSVVSTILILNYHHRNADTH 326


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.00
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 270 DVLVFLTCVCVRCTTVFYMFIIIYF 344
           D  VF+TC+ +    +  +FII+++
Sbjct: 216 DTKVFVTCIFIWAYVIPLIFIILFY 240


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.00
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 270 DVLVFLTCVCVRCTTVFYMFIIIYF 344
           D  VF+TC+ +    +  +FII+++
Sbjct: 216 DTKVFVTCIFIWAYVIPLIFIILFY 240


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 430 VHVQTSRRVACARSCGRLAR 489
           +H Q   R  C R C RL R
Sbjct: 237 MHQQIMARYNCERLCNRLGR 256


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 267 TDVLVFLTCVCVRCTTV 317
           T VL+F  CVCV   T+
Sbjct: 3   TIVLIFGFCVCVGALTI 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,198
Number of Sequences: 438
Number of extensions: 1869
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)