Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0723.Seq
         (765 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   2.7  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   3.5  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   4.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.2  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 575 FKPLA*RPAIYPFYKGT 525
           ++PL   P  YPFY GT
Sbjct: 200 YQPLQPFPPPYPFYPGT 216


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 203 LTSTLECNYLHTLICQTSGSVKLFM 277
           + STL C    T + ++SG  +LF+
Sbjct: 228 VVSTLSCYLERTELLRSSGETRLFL 252


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 477 LLGKIKQIHHGPIRSARPLVEWV 545
           +LG  + ++  PIR   P+V+++
Sbjct: 63  ILGLTEDLNSAPIRMKNPIVKYI 85


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 258 VPLNFL*RRNYFKANRQVFQMHIISVSCV 344
           VPL FL    YF     +F +H++ + C+
Sbjct: 138 VPLFFLLCIYYFYCAFIIFTVHLLFLLCI 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,749
Number of Sequences: 336
Number of extensions: 4198
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)