Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0723.Seq
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    27   2.9  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   5.1  
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    26   6.8  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   6.8  

>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +3

Query: 510 PIRSARPLVEWVNRRTLS*RLKNIFI*ILSTITQN 614
           P+ S  PL+  + R T++  +K  F+ +L+++T+N
Sbjct: 691 PVTSCGPLLNNIRRLTVNLEMKISFVNLLTSLTRN 725


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 698 YYTMHXNXSN--LGFIKISMGIIHNLSNKKVLC 606
           +Y +     N   G ++I + I+H LS +KVLC
Sbjct: 464 FYALRYREDNEHSGLVRICLFIVHYLSCEKVLC 496


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -1

Query: 486 YPVINILNKLPKHKAPK*YYDG*VISVITIYIMKNLSSSVVRTTKSSQHTRRK 328
           Y ++  LNKLP   A   ++D  +       I+    S VV     SQ  R+K
Sbjct: 266 YSMVGALNKLPLAIAGLVFFDAPITFGSVTAILLGFISGVVYAVAKSQQQRQK 318


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 173 LGMIDLNKNELTSTLECNYLH 235
           L M+D+ K +L  TL C +LH
Sbjct: 623 LDMVDVGKPDLVLTLLCRWLH 643


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,188
Number of Sequences: 5004
Number of extensions: 66562
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)