Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0723.Seq
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0830 + 25159758-25162460                                         29   5.4  
11_05_0058 + 18719852-18719929,18720032-18720889,18720969-187211...    28   7.1  

>06_03_0830 + 25159758-25162460
          Length = 900

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 152 KFKKTQTLGMIDLNKNELTSTLECNYLHTL 241
           K  ++  LG IDLN+N+ T  ++C+   TL
Sbjct: 492 KHTRSMKLGGIDLNENQCTEEVDCHTKSTL 521


>11_05_0058 +
          18719852-18719929,18720032-18720889,18720969-18721118,
          18722248-18722496,18722531-18722575,18722576-18722638
          Length = 480

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 42 RMWRLYQNLEFSTK 1
          R+WR Y NLEF+TK
Sbjct: 53 RVWRFYPNLEFTTK 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,495,369
Number of Sequences: 37544
Number of extensions: 350888
Number of successful extensions: 626
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)