Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0723.Seq
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49068-4|CAC42319.1|  705|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z49068-3|CAA88862.1|  650|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81529-6|CAB04293.1|  209|Caenorhabditis elegans Hypothetical pr...    29   4.8  

>Z49068-4|CAC42319.1|  705|Caenorhabditis elegans Hypothetical
           protein K01C8.3b protein.
          Length = 705

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = -1

Query: 177 PSVWVFLNFHSQVLAIDF*YKII*HTFFYGKDLLHHEWVDRNLRFRMW 34
           P+ W+ +NF    + +   +K+           L H W+D+++ +R W
Sbjct: 378 PNKWLLINFDCSTMWVRDRFKLT-QALVVDPLYLQHSWMDKSIDYRHW 424


>Z49068-3|CAA88862.1|  650|Caenorhabditis elegans Hypothetical
           protein K01C8.3a protein.
          Length = 650

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = -1

Query: 177 PSVWVFLNFHSQVLAIDF*YKII*HTFFYGKDLLHHEWVDRNLRFRMW 34
           P+ W+ +NF    + +   +K+           L H W+D+++ +R W
Sbjct: 378 PNKWLLINFDCSTMWVRDRFKLT-QALVVDPLYLQHSWMDKSIDYRHW 424


>Z81529-6|CAB04293.1|  209|Caenorhabditis elegans Hypothetical
           protein F35E8.8 protein.
          Length = 209

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -3

Query: 166 GFFELSLSSAGNRFLIQNHLTYI-FLWQRLTSS*VGR*KSSFPN 38
           GFF  +L ++G+ FL+ N LT+I  L  + ++  +GR KS   N
Sbjct: 136 GFFVNALKASGSGFLVGNSLTFIDLLVAQHSADLLGREKSDLFN 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,136,095
Number of Sequences: 27780
Number of extensions: 356571
Number of successful extensions: 770
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)