Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0723.Seq
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25800.1 68415.m03096 expressed protein                             31   1.1  
At3g07610.1 68416.m00911 transcription factor jumonji (jmjC) dom...    29   3.4  
At1g13210.1 68414.m01532 haloacid dehalogenase-like hydrolase fa...    29   4.5  
At4g04970.1 68417.m00722 callose synthase, putative / 1,3-beta-g...    28   5.9  
At3g25610.1 68416.m03188 haloacid dehalogenase-like hydrolase fa...    28   5.9  
At5g58410.1 68418.m07314 expressed protein contains similarity t...    28   7.8  

>At2g25800.1 68415.m03096 expressed protein
          Length = 996

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 69  EWVDRNLRFRMWRLYQNLE 13
           EWVDRNL+  +W+  +NLE
Sbjct: 614 EWVDRNLQQEVWKPLENLE 632


>At3g07610.1 68416.m00911 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 1027

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/51 (23%), Positives = 21/51 (41%)
 Frame = -1

Query: 315 EKPDDSP*NNSVFIKSLTEPEVWQINVCK*LHSKVEVNSFLFKSIIPSVWV 163
           +KPDD P    V    +  P +W+ N    +         + K ++P  W+
Sbjct: 395 DKPDDKPDEKPVNTDHMKYPSLWKANEAGIITCCCGAGELVLKRLLPDGWI 445


>At1g13210.1 68414.m01532 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1)
           (Chromaffin granule ATPase) from {Homo sapiens}
           SP|Q9Y2Q0, {Mus musculus} SP|P98200, {Bos taurus}
           SP|Q29449; contains InterPro accession IPR005834:
           Haloacid dehalogenase-like hydrolase; ESTs gb|T45045 and
           gb|AA394473 come from this gene
          Length = 1203

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 167 QTLGMIDLNKNELTSTLECNYLHTLICQTSGS 262
           + LGM+D   ++ T TL CN +  + C  +G+
Sbjct: 418 EELGMVDTILSDKTGTLTCNSMEFIKCSIAGT 449


>At4g04970.1 68417.m00722 callose synthase, putative / 1,3-beta-glucan
            synthase, putative similar to callose synthase 1
            catalytic subunit GI:13649388 from [Arabidopsis thaliana]
          Length = 1768

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = -1

Query: 195  LFKSIIPSVWVFLNFHSQVLAIDF*YKII*HTFFYGKDLLH 73
            L +  +P+VW F+    Q+ +  + + +   T ++G+ +LH
Sbjct: 1411 LERGFLPAVWDFITMQLQLASFFYTFSMGTRTHYFGRTILH 1451


>At3g25610.1 68416.m03188 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Mus
           musculus [SP|P98200, SP|P70704], {Bos taurus} SP|Q29449;
           contains InterPro accession IPR005834: Haloacid
           dehalogenase-like hydrolase
          Length = 1202

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 167 QTLGMIDLNKNELTSTLECNYLHTLICQTSG 259
           + LGM+D   ++ T TL CN +  + C  +G
Sbjct: 419 EELGMVDTILSDKTGTLTCNSMEFIKCSIAG 449


>At5g58410.1 68418.m07314 expressed protein contains similarity to
           hypothetical proteins
          Length = 1873

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 222 HSKVEVNSFLFKSIIPSVWVFLNFHSQVL 136
           HS +     LF    P  WV+LN H  VL
Sbjct: 343 HSSMWEAVLLFSKKFPQSWVYLNVHKSVL 371


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,861,554
Number of Sequences: 28952
Number of extensions: 318557
Number of successful extensions: 600
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)