Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0719.Seq
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     27   2.5  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   7.6  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   7.6  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    26   7.6  

>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -1

Query: 778 SWAIALIGRFFALLTVGXHVLLISGLLFPNWNTTQPLSRSILLIYKG 638
           S  IALI  F +++T+  H+L ++     NW     +  S+L +++G
Sbjct: 421 SLMIALISDFLSVMTIHIHLLYLASSRLYNWQLR--VIYSLLQLFRG 465


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 593 VKSAHFLTNRPKSAKSLINQKNRP 664
           VK   FLTN   +  SL+ Q NRP
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRP 698


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = -3

Query: 170 CACSTQQY*IYN----VSSQIQYRRDKRAREREKSDKR*KLRTIECMHAYIYINK 18
           C  S  Q  IYN    +    Q RRD +  +R K+D+    +++   H  + + K
Sbjct: 796 CKLSENQLEIYNRYAALQKNQQLRRDDKRNKRSKNDEESDGKSLSAGHVLMQLRK 850


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 346 PPSSALVSRRQSNRHD 299
           PPSS L S+R   RHD
Sbjct: 147 PPSSVLASQRHHRRHD 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,095,124
Number of Sequences: 5004
Number of extensions: 57875
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)