Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0719.Seq
         (835 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   7.2  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   7.2  
U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
           protein Y57A10A.18b protein.
          Length = 1459

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 403 KRRPVNCNTTHYRANWVPGPPSSALVSRRQSNRHDD 296
           K++P + N T+ +     GP    LV +R+S++ DD
Sbjct: 434 KKKPYDQNNTNQQRTNTGGPTVKDLVEKRKSSKSDD 469


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
           protein Y57A10A.18a protein.
          Length = 1456

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 403 KRRPVNCNTTHYRANWVPGPPSSALVSRRQSNRHDD 296
           K++P + N T+ +     GP    LV +R+S++ DD
Sbjct: 434 KKKPYDQNNTNQQRTNTGGPTVKDLVEKRKSSKSDD 469


>U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical
           protein F14B8.5a protein.
          Length = 537

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 233 CNFGVSNGIL*CAYSFMRVLPCACSTQQY 147
           CNF  SN    C +SF+ V+ CA  + QY
Sbjct: 173 CNFVPSNHQNQCQFSFVLVISCADQSIQY 201


>U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical
           protein F14B8.5b protein.
          Length = 501

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 233 CNFGVSNGIL*CAYSFMRVLPCACSTQQY 147
           CNF  SN    C +SF+ V+ CA  + QY
Sbjct: 137 CNFVPSNHQNQCQFSFVLVISCADQSIQY 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,355,977
Number of Sequences: 27780
Number of extensions: 338026
Number of successful extensions: 855
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)