Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0719.Seq
         (835 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   3.5  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   4.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.0  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 155 QQY*IYNVSSQIQYRRDKRAREREKSDKR*KLRTIECMHAYIYIN 21
           ++Y  Y  +S+ +  RD+R RER K  K     +  C ++  Y N
Sbjct: 276 REYRKYRETSK-ERSRDRRERERSKEPKIISSLSNSCNYSNNYYN 319


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 155 QQY*IYNVSSQIQYRRDKRAREREKSDK 72
           ++Y  Y  +S+ ++R D+R RER K  K
Sbjct: 287 REYRKYRETSKERFR-DRRERERSKESK 313


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 683 HHSTPISVYSF 651
           H+S+P S+YSF
Sbjct: 471 HNSSPFSIYSF 481


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 683 HHSTPISVYSF 651
           H+S+P S+YSF
Sbjct: 509 HNSSPFSIYSF 519


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 418 SHDVVKRRPVNCNTTHYRANWVPGP 344
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,259
Number of Sequences: 438
Number of extensions: 4792
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)