Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0717.Seq
         (694 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.8  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   2.4  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    22   5.5  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   9.6  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   9.6  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
 Frame = -3

Query: 521  GRIPVQFFCNQALTIFFKDCVVYIICSWFSIRKFN------WCNFNQMLDFP 384
            G  P       A   +  DC  Y+ C W     FN      W N   + D+P
Sbjct: 1272 GPQPYSACSENAFAAYPGDCTRYLHCLWGKYEVFNCAPGLHWDNNKNICDWP 1323


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -3

Query: 554 YHYQILLGPG--SGRIPVQFFCNQAL 483
           YH Q+LL PG  SG +  Q F  Q +
Sbjct: 118 YHPQVLLSPGGYSGSLCDQGFAQQPM 143


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 276 SKHFPYWQKR 305
           SKH+ YWQ +
Sbjct: 18  SKHYSYWQSK 27


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 333 PHEFSIHPISFFASMENVC 277
           P EF+  P + F +  N+C
Sbjct: 499 PTEFACRPGTVFHTQSNIC 517


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 471 KENGQCLVTKK 503
           K NG+C++ KK
Sbjct: 43  KNNGECVINKK 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,609
Number of Sequences: 336
Number of extensions: 3964
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)