Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0717.Seq
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 30 0.36
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 27 3.4
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 3.4
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|... 27 3.4
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 5.9
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 26 5.9
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ... 26 5.9
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch... 25 7.9
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 25 7.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.9
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 29.9 bits (64), Expect = 0.36
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +3
Query: 192 HNILS--QIPRLQRS*NN-SIKVVRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNI 362
HNI+ Q ++Q NN S ++V+ +RIKS+K P W + I+ K E TR + ++
Sbjct: 577 HNIIKKCQESQIQTGKNNCSFQLVK-KRIKSTKKAPSW-RSIIKAFKKRENTRCNFLSSL 634
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 309 LDELKIHEETRVTVVKNIPEINAKLWKI 392
+ E+ H+ +R+ +V+NI I WK+
Sbjct: 278 IPEISFHDTSRLDLVRNIASIPKSRWKL 305
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +3
Query: 414 PIEFPYGEPTADDINYTILKENGQCLVTKKLDRNSARSRP*KNLIVIEKR*ILQPXKE-- 587
P+E P EP + + NYT+ K+N + ++++ + S+ P K + +K + +P
Sbjct: 68 PLE-PQVEPKSIENNYTLKKKNEEGFLSQQ-ENKSSNQNPSKANNLFDKLGVSKPITFIA 125
Query: 588 -ILDIDGIQDMEGDFK 632
IL + G ME + +
Sbjct: 126 CILQLGGTSFMESELQ 141
>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 148 SKGYKHPGGIRYPGGITYYPRF-PD-YKDPEITPSKLLE*SELNQANIFHTGKK 303
SKG+ GGIR P I Y P PD D +T +L + L A + H G K
Sbjct: 381 SKGFITEGGIRCPAIIRYPPLIKPDIISDEFVTVMDILP-TILELAEVPHPGHK 433
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 420 EFPYGEPTADDINYTILKENGQCLVTKKLDRNSA 521
+ YGE D++N I + + + ++ KKLD+ A
Sbjct: 1367 DLTYGELQDDELNELISRTDEELVLFKKLDKERA 1400
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 537 KNLIVIEKR*ILQPXKEILDIDGIQDMEGD 626
K L + +R L P E D+D + DMEGD
Sbjct: 974 KYLASVRERRDLAPMLEEPDMDDLDDMEGD 1003
>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 25.8 bits (54), Expect = 5.9
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +3
Query: 204 SQIPRLQRS*NNSIKVVRVERIKSSKHFPYWQKRILDE----LKIHEETRVTVVKNIPEI 371
+QI RL +S N + + + +E + + P KR L IH+ ++ N+P I
Sbjct: 118 NQIKRLPQSDNTTTERI-IENNPNYSNKPSKLKRALSGENSVFSIHQRNTLSPSSNLPRI 176
Query: 372 NAKLWKIKHLIK 407
+ L+ IK ++
Sbjct: 177 PSDLYDIKQFLE 188
>SPAC18G6.07c |mra1||ribosome biogenesis protein
Mra1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 444 ADDINYTILKENGQCLVTKKLDRNSARSRP 533
A D Y +L + + KKL+RN A++RP
Sbjct: 167 AKDAKYQLLNCDDHQGILKKLNRNIAQARP 196
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 378 KLWKIKHLIKITPIEFPYGEPT 443
K+W +++L + PI FP G PT
Sbjct: 239 KVWDLRNLSSLVPIPFPAG-PT 259
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 554 YHYQILLGP-GSGRIPVQFFCNQALTIFFKDCVVYII 447
Y+ ILLG GSG+ + AL DC+VY+I
Sbjct: 2167 YNGIILLGKTGSGKSQIFRILQSALLNIGIDCIVYVI 2203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,344
Number of Sequences: 5004
Number of extensions: 62984
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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