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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0717.Seq
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    30   0.36 
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   3.4  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    27   3.4  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    27   3.4  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   5.9  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   5.9  
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    26   5.9  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    25   7.9  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   7.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   7.9  

>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = +3

Query: 192 HNILS--QIPRLQRS*NN-SIKVVRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNI 362
           HNI+   Q  ++Q   NN S ++V+ +RIKS+K  P W + I+   K  E TR   + ++
Sbjct: 577 HNIIKKCQESQIQTGKNNCSFQLVK-KRIKSTKKAPSW-RSIIKAFKKRENTRCNFLSSL 634


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 309 LDELKIHEETRVTVVKNIPEINAKLWKI 392
           + E+  H+ +R+ +V+NI  I    WK+
Sbjct: 278 IPEISFHDTSRLDLVRNIASIPKSRWKL 305


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = +3

Query: 414 PIEFPYGEPTADDINYTILKENGQCLVTKKLDRNSARSRP*KNLIVIEKR*ILQPXKE-- 587
           P+E P  EP + + NYT+ K+N +  ++++ +  S+   P K   + +K  + +P     
Sbjct: 68  PLE-PQVEPKSIENNYTLKKKNEEGFLSQQ-ENKSSNQNPSKANNLFDKLGVSKPITFIA 125

Query: 588 -ILDIDGIQDMEGDFK 632
            IL + G   ME + +
Sbjct: 126 CILQLGGTSFMESELQ 141


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 148 SKGYKHPGGIRYPGGITYYPRF-PD-YKDPEITPSKLLE*SELNQANIFHTGKK 303
           SKG+   GGIR P  I Y P   PD   D  +T   +L  + L  A + H G K
Sbjct: 381 SKGFITEGGIRCPAIIRYPPLIKPDIISDEFVTVMDILP-TILELAEVPHPGHK 433


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 420  EFPYGEPTADDINYTILKENGQCLVTKKLDRNSA 521
            +  YGE   D++N  I + + + ++ KKLD+  A
Sbjct: 1367 DLTYGELQDDELNELISRTDEELVLFKKLDKERA 1400


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 537  KNLIVIEKR*ILQPXKEILDIDGIQDMEGD 626
            K L  + +R  L P  E  D+D + DMEGD
Sbjct: 974  KYLASVRERRDLAPMLEEPDMDDLDDMEGD 1003


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +3

Query: 204 SQIPRLQRS*NNSIKVVRVERIKSSKHFPYWQKRILDE----LKIHEETRVTVVKNIPEI 371
           +QI RL +S N + + + +E   +  + P   KR L        IH+   ++   N+P I
Sbjct: 118 NQIKRLPQSDNTTTERI-IENNPNYSNKPSKLKRALSGENSVFSIHQRNTLSPSSNLPRI 176

Query: 372 NAKLWKIKHLIK 407
            + L+ IK  ++
Sbjct: 177 PSDLYDIKQFLE 188


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 444 ADDINYTILKENGQCLVTKKLDRNSARSRP 533
           A D  Y +L  +    + KKL+RN A++RP
Sbjct: 167 AKDAKYQLLNCDDHQGILKKLNRNIAQARP 196


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 378 KLWKIKHLIKITPIEFPYGEPT 443
           K+W +++L  + PI FP G PT
Sbjct: 239 KVWDLRNLSSLVPIPFPAG-PT 259


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 554  YHYQILLGP-GSGRIPVQFFCNQALTIFFKDCVVYII 447
            Y+  ILLG  GSG+  +      AL     DC+VY+I
Sbjct: 2167 YNGIILLGKTGSGKSQIFRILQSALLNIGIDCIVYVI 2203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,344
Number of Sequences: 5004
Number of extensions: 62984
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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