BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ps4M0717.Seq (694 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 30 0.36 SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 27 3.4 SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 3.4 SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|... 27 3.4 SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 5.9 SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 26 5.9 SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ... 26 5.9 SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch... 25 7.9 SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 25 7.9 SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.9 >SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1|Schizosaccharomyces pombe|chr 3|||Manual Length = 948 Score = 29.9 bits (64), Expect = 0.36 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%) Frame = +3 Query: 192 HNILS--QIPRLQRS*NN-SIKVVRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNI 362 HNI+ Q ++Q NN S ++V+ +RIKS+K P W + I+ K E TR + ++ Sbjct: 577 HNIIKKCQESQIQTGKNNCSFQLVK-KRIKSTKKAPSW-RSIIKAFKKRENTRCNFLSSL 634 >SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 767 Score = 26.6 bits (56), Expect = 3.4 Identities = 9/28 (32%), Positives = 17/28 (60%) Frame = +3 Query: 309 LDELKIHEETRVTVVKNIPEINAKLWKI 392 + E+ H+ +R+ +V+NI I WK+ Sbjct: 278 IPEISFHDTSRLDLVRNIASIPKSRWKL 305 >SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|Schizosaccharomyces pombe|chr 3|||Manual Length = 736 Score = 26.6 bits (56), Expect = 3.4 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%) Frame = +3 Query: 414 PIEFPYGEPTADDINYTILKENGQCLVTKKLDRNSARSRP*KNLIVIEKR*ILQPXKE-- 587 P+E P EP + + NYT+ K+N + ++++ + S+ P K + +K + +P Sbjct: 68 PLE-PQVEPKSIENNYTLKKKNEEGFLSQQ-ENKSSNQNPSKANNLFDKLGVSKPITFIA 125 Query: 588 -ILDIDGIQDMEGDFK 632 IL + G ME + + Sbjct: 126 CILQLGGTSFMESELQ 141 >SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|||Manual Length = 554 Score = 26.6 bits (56), Expect = 3.4 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = +1 Query: 148 SKGYKHPGGIRYPGGITYYPRF-PD-YKDPEITPSKLLE*SELNQANIFHTGKK 303 SKG+ GGIR P I Y P PD D +T +L + L A + H G K Sbjct: 381 SKGFITEGGIRCPAIIRYPPLIKPDIISDEFVTVMDILP-TILELAEVPHPGHK 433 >SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22|Schizosaccharomyces pombe|chr 3|||Manual Length = 1680 Score = 25.8 bits (54), Expect = 5.9 Identities = 11/34 (32%), Positives = 20/34 (58%) Frame = +3 Query: 420 EFPYGEPTADDINYTILKENGQCLVTKKLDRNSA 521 + YGE D++N I + + + ++ KKLD+ A Sbjct: 1367 DLTYGELQDDELNELISRTDEELVLFKKLDKERA 1400 >SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1405 Score = 25.8 bits (54), Expect = 5.9 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +3 Query: 537 KNLIVIEKR*ILQPXKEILDIDGIQDMEGD 626 K L + +R L P E D+D + DMEGD Sbjct: 974 KYLASVRERRDLAPMLEEPDMDDLDDMEGD 1003 >SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 296 Score = 25.8 bits (54), Expect = 5.9 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%) Frame = +3 Query: 204 SQIPRLQRS*NNSIKVVRVERIKSSKHFPYWQKRILDE----LKIHEETRVTVVKNIPEI 371 +QI RL +S N + + + +E + + P KR L IH+ ++ N+P I Sbjct: 118 NQIKRLPQSDNTTTERI-IENNPNYSNKPSKLKRALSGENSVFSIHQRNTLSPSSNLPRI 176 Query: 372 NAKLWKIKHLIK 407 + L+ IK ++ Sbjct: 177 PSDLYDIKQFLE 188 >SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosaccharomyces pombe|chr 1|||Manual Length = 359 Score = 25.4 bits (53), Expect = 7.9 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +3 Query: 444 ADDINYTILKENGQCLVTKKLDRNSARSRP 533 A D Y +L + + KKL+RN A++RP Sbjct: 167 AKDAKYQLLNCDDHQGILKKLNRNIAQARP 196 >SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual Length = 1115 Score = 25.4 bits (53), Expect = 7.9 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +3 Query: 378 KLWKIKHLIKITPIEFPYGEPT 443 K+W +++L + PI FP G PT Sbjct: 239 KVWDLRNLSSLVPIPFPAG-PT 259 >SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccharomyces pombe|chr 1|||Manual Length = 4196 Score = 25.4 bits (53), Expect = 7.9 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = -3 Query: 554 YHYQILLGP-GSGRIPVQFFCNQALTIFFKDCVVYII 447 Y+ ILLG GSG+ + AL DC+VY+I Sbjct: 2167 YNGIILLGKTGSGKSQIFRILQSALLNIGIDCIVYVI 2203 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,866,344 Number of Sequences: 5004 Number of extensions: 62984 Number of successful extensions: 134 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 129 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 134 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 321951680 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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