Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0717.Seq
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0089 - 5138048-5138561,5138864-5139105,5139712-5140079,514...    31   0.87 
02_05_0258 + 27222058-27223198,27223297-27223460,27224399-272245...    28   8.1  
02_01_0171 - 1179095-1179388,1179668-1179801,1180036-1180900,118...    28   8.1  
01_07_0033 - 40619145-40619658,40619761-40620002,40620178-406205...    28   8.1  

>10_02_0089 -
           5138048-5138561,5138864-5139105,5139712-5140079,
           5140862-5140943
          Length = 401

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 183 PWGHNILSQIPRLQRS*NNSIKVVRVERIKSSKHFPYWQK 302
           PWGH + ++ PR+ RS   +IK +       SK++PYW +
Sbjct: 100 PWGHPLTTKSPRMMRS---AIKFI-------SKYWPYWNR 129


>02_05_0258 +
           27222058-27223198,27223297-27223460,27224399-27224575,
           27224713-27224761,27224991-27225793
          Length = 777

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 294 WQKRILDELKIHEETRVTVVKN 359
           W+K++ DE+K  E+ R+ + KN
Sbjct: 426 WEKKLYDEVKAEEKMRLLLAKN 447


>02_01_0171 -
           1179095-1179388,1179668-1179801,1180036-1180900,
           1180998-1181258,1181424-1181621,1181752-1181982,
           1185337-1185648,1185750-1186247
          Length = 930

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +2

Query: 473 RKWSMLGYKKIGPEFGQIQALEEFDSDRKKMNSTTIXRDTRHRW 604
           RKW  +  K +GPE       E  D +  K+ +       RH W
Sbjct: 812 RKWQSIKSKALGPEHSVASLQEVLDGNMLKVWTDRAAEIERHGW 855


>01_07_0033 -
           40619145-40619658,40619761-40620002,40620178-40620566,
           40621586-40621688
          Length = 415

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 183 PWGHNILSQIPRLQRS*NNSIKVVRVERIKSSKHFPYWQK 302
           PWGH +  + PR+ RS   +I+ +       S H+PYW +
Sbjct: 114 PWGHPLPFKSPRIMRS---AIQFI-------SSHWPYWNR 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,034,576
Number of Sequences: 37544
Number of extensions: 352227
Number of successful extensions: 711
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)