Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0717.Seq
         (694 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC000217-1|AAH00217.1|  161|Homo sapiens mitochondrial ribosomal...    77   6e-14
AK126402-1|BAC86542.1|  191|Homo sapiens protein ( Homo sapiens ...    77   6e-14
BC022391-1|AAH22391.1|  161|Homo sapiens mitochondrial ribosomal...    75   2e-13
AC092587-4|AAX88929.1|  161|Homo sapiens unknown protein.              75   2e-13
AB051342-1|BAB54932.1|   68|Homo sapiens mitochondrial ribosomal...    53   8e-07
AK093035-1|BAC04026.1|  809|Homo sapiens protein ( Homo sapiens ...    31   3.0  

>BC000217-1|AAH00217.1|  161|Homo sapiens mitochondrial ribosomal
           protein L30 protein.
          Length = 161

 Score = 77.0 bits (181), Expect = 6e-14
 Identities = 37/86 (43%), Positives = 55/86 (63%)
 Frame = +3

Query: 237 NSIKVVRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLIKITP 416
           N  K+  V RIKS++  PYW+K I+  L + +     V KNIP +NAKL  +KHLI+I P
Sbjct: 62  NPHKLHIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIKP 121

Query: 417 IEFPYGEPTADDINYTILKENGQCLV 494
           ++ P G PT ++++ T LK  G+ +V
Sbjct: 122 LKLPQGLPTEENMSNTCLKSTGELVV 147


>AK126402-1|BAC86542.1|  191|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44438 fis, clone UTERU2019940, moderately
           similar to Homo sapiens mitochondrial ribosomal protein
           L30 (MRPL30). ).
          Length = 191

 Score = 77.0 bits (181), Expect = 6e-14
 Identities = 37/86 (43%), Positives = 55/86 (63%)
 Frame = +3

Query: 237 NSIKVVRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLIKITP 416
           N  K+  V RIKS++  PYW+K I+  L + +     V KNIP +NAKL  +KHLI+I P
Sbjct: 92  NPHKLHIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIKP 151

Query: 417 IEFPYGEPTADDINYTILKENGQCLV 494
           ++ P G PT ++++ T LK  G+ +V
Sbjct: 152 LKLPQGLPTEENMSNTCLKSTGELVV 177


>BC022391-1|AAH22391.1|  161|Homo sapiens mitochondrial ribosomal
           protein L30 protein.
          Length = 161

 Score = 74.9 bits (176), Expect = 2e-13
 Identities = 36/86 (41%), Positives = 54/86 (62%)
 Frame = +3

Query: 237 NSIKVVRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLIKITP 416
           N  K+  V RIKS++  PYW+K I+  L + +     V KNIP +NAKL  +KHLI+I P
Sbjct: 62  NPHKLHIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIKP 121

Query: 417 IEFPYGEPTADDINYTILKENGQCLV 494
           ++ P G P  ++++ T LK  G+ +V
Sbjct: 122 LKLPQGLPAEENMSNTCLKSTGELVV 147


>AC092587-4|AAX88929.1|  161|Homo sapiens unknown protein.
          Length = 161

 Score = 74.9 bits (176), Expect = 2e-13
 Identities = 36/86 (41%), Positives = 54/86 (62%)
 Frame = +3

Query: 237 NSIKVVRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLIKITP 416
           N  K+  V RIKS++  PYW+K I+  L + +     V KNIP +NAKL  +KHLI+I P
Sbjct: 62  NPHKLHIVTRIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIKP 121

Query: 417 IEFPYGEPTADDINYTILKENGQCLV 494
           ++ P G P  ++++ T LK  G+ +V
Sbjct: 122 LKLPQGLPAEENMSNTCLKSTGELVV 147


>AB051342-1|BAB54932.1|   68|Homo sapiens mitochondrial ribosomal
           protein L30 protein.
          Length = 68

 Score = 53.2 bits (122), Expect = 8e-07
 Identities = 23/49 (46%), Positives = 34/49 (69%)
 Frame = +3

Query: 348 VVKNIPEINAKLWKIKHLIKITPIEFPYGEPTADDINYTILKENGQCLV 494
           V KNIP +NAKL  +KHLI+I P++ P G P  ++++ T LK  G+ +V
Sbjct: 6   VHKNIPSVNAKLKVVKHLIRIKPLKLPQGLPAEENMSNTCLKSTGELVV 54


>AK093035-1|BAC04026.1|  809|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35716 fis, clone TESTI2000431. ).
          Length = 809

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +3

Query: 237 NSIKVVRVERIKSSKHFPYWQKR-ILDELKIHEETRVTVVKNIPE---INAKLWKIKHLI 404
           N  KV+R +R K  K  PY     ++  L  +E+ + T +  I E       + ++KH+ 
Sbjct: 369 NGKKVIRYKRAKLEKWAPYLNSNGLVSRLTTYEDLQCTNILEIKEWYQNREDMLELKHIN 428

Query: 405 KITPIEFPYGEP 440
           K T ++  Y +P
Sbjct: 429 KTTDLKTDYFKP 440


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,901,516
Number of Sequences: 237096
Number of extensions: 2113512
Number of successful extensions: 7448
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7437
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)