Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0717.Seq
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100305-1|AAC68918.1|  197|Caenorhabditis elegans Hypothetical ...    63   2e-10
Z93782-2|CAB07854.2|  562|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z29443-8|CAE45742.1|  455|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z29443-7|CAA82571.2|  497|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF003739-7|AAB58068.1|  339|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z75530-4|CAA99794.2|  357|Caenorhabditis elegans Hypothetical pr...    28   7.3  
X66104-1|CAA46899.1|  557|Caenorhabditis elegans esterase protein.     28   7.3  

>AF100305-1|AAC68918.1|  197|Caenorhabditis elegans Hypothetical
           protein W04B5.4 protein.
          Length = 197

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
 Frame = +3

Query: 288 PYWQKRILDEL--KIHEETRVTVVKNIPEINAKLWKIKHLIKITPIEFPYG-EPTADDIN 458
           P W K+ ++ L     +  R+ V +N   IN +LWKIKHLI++ P+EF  G EPT DDI 
Sbjct: 72  PKWTKKHVENLFGADFKVGRMEVFRNTELINTELWKIKHLIELRPVEFKNGVEPTEDDIF 131

Query: 459 YTILKENGQCLV 494
            T L  NGQC V
Sbjct: 132 STSLAPNGQCEV 143


>Z93782-2|CAB07854.2|  562|Caenorhabditis elegans Hypothetical
           protein R12G8.2 protein.
          Length = 562

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 578 WL*NSSFFYHYQILLGPGSGRIPVQFFCNQALTIFFKDCVV 456
           W  +S+FF+   +    G G I  Q F  Q  T+ +  C V
Sbjct: 268 WTFSSAFFFSMNVYTTTGYGSISAQTFSGQLFTMIYAFCFV 308


>Z29443-8|CAE45742.1|  455|Caenorhabditis elegans Hypothetical
           protein T07C4.9b protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 154 GYKHPGGIRYPGGITYYPRFPDY 222
           GY   GG  YPGG   YP+ P Y
Sbjct: 62  GYPGQGGAPYPGGSGGYPQAPQY 84


>Z29443-7|CAA82571.2|  497|Caenorhabditis elegans Hypothetical
           protein T07C4.9a protein.
          Length = 497

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 154 GYKHPGGIRYPGGITYYPRFPDY 222
           GY   GG  YPGG   YP+ P Y
Sbjct: 104 GYPGQGGAPYPGGSGGYPQAPQY 126


>AF003739-7|AAB58068.1|  339|Caenorhabditis elegans Hypothetical
           protein M01D7.1 protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 380 FSIDFWYIFNHSDSGLLMNFQFIQYPFLP-VWKMFA*FNSLY 258
           FS+DFW  +    S     F  I+Y  LP +WK    FN L+
Sbjct: 132 FSLDFWIEWFCKSSADKKIFPIIKYTKLPKLWKFLNIFNELF 173


>Z75530-4|CAA99794.2|  357|Caenorhabditis elegans Hypothetical
           protein C47E8.6 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 261 ERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLIKITPIEFPYGEP 440
           E++++     Y    +   +K  +ET++  +K   EI  +   +KH+ +I  IE    E 
Sbjct: 217 EKLEAQSDLKYAIVHLEQRMKEEQETQMQAMKEEREIEIEEIGLKHMEQIRTIESGNSEQ 276

Query: 441 TA 446
           TA
Sbjct: 277 TA 278


>X66104-1|CAA46899.1|  557|Caenorhabditis elegans esterase protein.
          Length = 557

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 518 GQIQALEEFDSDRKKMNSTTIXRDTRHRWN 607
           G+IQ LE+ D D  K  + ++ R +R R+N
Sbjct: 526 GRIQFLEKIDGDSDKYQNWSMERRSRQRFN 555


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,478,879
Number of Sequences: 27780
Number of extensions: 344908
Number of successful extensions: 893
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)