Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0717.Seq
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20530.1 68414.m02558 hypothetical protein                          29   2.9  
At5g39090.1 68418.m04729 transferase family protein similar to a...    28   5.1  
At2g06820.1 68415.m00761 expressed protein low similarity to zin...    27   8.9  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    27   8.9  

>At1g20530.1 68414.m02558 hypothetical protein
          Length = 614

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +3

Query: 294 WQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHLIKITPIEFPYGEPTADDINYTILK 473
           W+K++  E+K  E+ R + +KN   +     K   L KI  I     +  +  +  +I K
Sbjct: 318 WEKKLYQEVKAEEKLRTSHMKNYKLLRRLEAKSADLSKIEAIRSSI-QCLSTRMRVSIHK 376

Query: 474 ENGQCLVTKKL 506
            N  CL   KL
Sbjct: 377 INNICLTINKL 387


>At5g39090.1 68418.m04729 transferase family protein similar to
           anthocyanin 5-aromatic acyltransferase from Gentiana
           triflora GI:4185599, malonyl CoA:anthocyanin
           5-O-glucoside-6'''-O-malonyltransferase from Perilla
           frutescens GI:17980232, Salvia splendens GI:17980234;
           contains Pfam profile PF02458 transferase family
          Length = 448

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
 Frame = +3

Query: 345 TVVKNIPEINAKLWKIKHLI-KITPIE-FPYGEPTADDINYT--ILKENGQCLVTKKLDR 512
           TV+K  PEI+ K+ KI H I K   ++  P  E  +D + YT  + +EN + L   KL R
Sbjct: 201 TVIKGPPEIDTKVLKIWHSIHKPKSLKLLPRPEIESDVVRYTFELTRENIEKL-RDKLKR 259

Query: 513 NSA 521
            S+
Sbjct: 260 ESS 262


>At2g06820.1 68415.m00761 expressed protein low similarity to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 267

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
 Frame = +3

Query: 279 KHFPYWQKRILDELKIHEETRVTVVKNIPEINAK----LWKIKHLIKITPIEFPYGEPTA 446
           KHF  W+ ++L  ++  EE    + K I   + K    L  ++ LIK T ++FP G    
Sbjct: 128 KHF--WKPKMLQAIR--EELGEVMTKEITSSSVKIKVLLDGLQPLIKETIVDFPNGGEAV 183

Query: 447 DDINYTILKENGQCLVTKKL 506
             ++Y  LK +  CL  ++L
Sbjct: 184 VYLDYKNLKNH--CLHCQRL 201


>At1g03080.1 68414.m00282 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1744

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +3

Query: 234 NNSIKVVRVERIKSSKHFPYWQKRILDELKIHEETRVTVVKNIPEINAKLWKIKHL 401
           N+    +  ER     H    +KRI D  K H E +V V++   E  + L KI+ L
Sbjct: 768 NDDKTTLTSERESLLSHIDTMRKRIEDLEKEHAELKVKVLELATERESSLQKIEEL 823


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,421,767
Number of Sequences: 28952
Number of extensions: 312353
Number of successful extensions: 710
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)