Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0714.Seq
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844...    29   2.8  
03_05_1150 - 30758981-30759778,30759970-30760729,30760823-307609...    28   8.5  

>01_07_0232 +
           42182942-42183490,42183593-42183661,42184320-42184451,
           42184547-42184600,42184714-42184758,42185383-42185522,
           42185777-42185902,42185985-42186002,42186631-42187276,
           42188121-42188843
          Length = 833

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 203 ANWVPAPPI-LNRRFLERRLTDDISANVSVSRGCGAPTA 90
           ++W P PP+ L+ +FL  R     +A  S+   CG P A
Sbjct: 409 SSWPPPPPVQLSMQFLPPRPEPAAAARTSICCTCGVPMA 447


>03_05_1150 -
           30758981-30759778,30759970-30760729,30760823-30760920,
           30761997-30762521
          Length = 726

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -2

Query: 194 VPAPP-ILNRRFLERRLTDDISANVSVSRGCGAPTARRTNATTSFLTATILVYAIGAELX 18
           +P P  +L+R F E++    I+  V      G P A  TN  +  +T TI  Y +     
Sbjct: 602 LPVPVWLLSRAFPEKKWIALINVPVISYGFAGMPPATPTNIASWLVTGTIFNYFVFKYRK 661

Query: 17  GCWHQ 3
           G W +
Sbjct: 662 GWWQK 666


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,868,155
Number of Sequences: 37544
Number of extensions: 305583
Number of successful extensions: 525
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)