Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0714.Seq
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z81546-3|CAB04451.1|  321|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical protein
            C52E12.4 protein.
          Length = 1487

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 174  EPAFFRTPAHRRYLRK 127
            EP+F RTPAH  YL K
Sbjct: 1451 EPSFLRTPAHMTYLAK 1466


>Z81546-3|CAB04451.1|  321|Caenorhabditis elegans Hypothetical
           protein F53A2.3 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = -2

Query: 218 TTHYRANWVPAPPILNRRFLERRLTDDISANVSVSRGCGAPTARRTNATTSFLTA 54
           TT  +A+ VPA  +  +  + R LTDD  A+++V++  G  TA+ ++     + A
Sbjct: 172 TTGLKASLVPARFLKEKTVIVRNLTDD--ADINVNKVFGQLTAQSSSLKNIVINA 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,701,655
Number of Sequences: 27780
Number of extensions: 250381
Number of successful extensions: 411
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)