Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0714.Seq
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g33210.1 68418.m03923 zinc finger protein-related similar to ...    30   1.8  
At3g51060.1 68416.m05591 zinc finger protein, putative / lateral...    30   1.8  

>At5g33210.1 68418.m03923 zinc finger protein-related similar to
           lateral root primordium 1 (LRP1) [Arabidopsis thaliana]
           GI:882341; contains Pfam profile PF05142: Domain of
           unknown function (DUF702),  TIGR01623: putative zinc
           finger domain, LRP1 type
          Length = 173

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -2

Query: 218 TTHYRANWVPAPPILNRRFLERRLTDDISANVSVSRGCGAPTARRTN--ATTSFLTATIL 45
           +TH R+ WVPA     RR  +++L   +     + RG   P   R N  AT+S L  T +
Sbjct: 80  STHVRSTWVPA---TKRRERQQQLA-TVQPQTQLPRGESVPKRHRENLPATSSSLVCTRI 135

Query: 44  VYAIG 30
            +  G
Sbjct: 136 PFHSG 140


>At3g51060.1 68416.m05591 zinc finger protein, putative / lateral
           root primordium (LRP) protein-related similar to lateral
           root primordium 1 (LRP1) [Arabidopsis thaliana]
           GI:882341; contains Pfam profile PF05142: Domain of
           unknown function (DUF702)
          Length = 252

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -2

Query: 218 TTHYRANWVPAPPILNRRFLERRLTDDISANVSVSRGCGAPTARRTN--ATTSFLTATIL 45
           +TH R+ WVPA     RR  +++L   +     + RG   P   R N  AT+S L  T +
Sbjct: 172 STHVRSTWVPA---AKRRERQQQLA-TVQPQTQLPRGESVPKRHRENLPATSSSLVCTRI 227

Query: 44  VYAIGAEL 21
               G E+
Sbjct: 228 PSHSGLEV 235


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,880,143
Number of Sequences: 28952
Number of extensions: 226377
Number of successful extensions: 315
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)