Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0712.Seq
         (704 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q38XQ1 Cluster: Putative uncharacterized protein; n=1; ...    33   5.2  
UniRef50_UPI00006CFB59 Cluster: hypothetical protein TTHERM_0048...    33   6.8  

>UniRef50_Q38XQ1 Cluster: Putative uncharacterized protein; n=1;
           Lactobacillus sakei subsp. sakei 23K|Rep: Putative
           uncharacterized protein - Lactobacillus sakei subsp.
           sakei (strain 23K)
          Length = 266

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 302 NDEDPHSNIKTSFDSNFSNGHSKFATQ 382
           +DE    N++ + +SNF NGH K ATQ
Sbjct: 129 SDETDMKNVENAINSNFDNGHIKIATQ 155


>UniRef50_UPI00006CFB59 Cluster: hypothetical protein
           TTHERM_00485970; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00485970 - Tetrahymena
           thermophila SB210
          Length = 1266

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 39  TIEMIHNHSDSDNTPLSPVKG--IERSSKADGRTTTARLTL 155
           TI+ IHNHS++D+  +SP+ G    +SSK  G   T  L L
Sbjct: 619 TIQTIHNHSNNDSI-ISPISGKMTNKSSKRGGSNITVDLRL 658


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,913,430
Number of Sequences: 1657284
Number of extensions: 11350586
Number of successful extensions: 27412
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27405
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)