Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0712.Seq
         (704 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    24   1.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   3.2  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   4.2  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   4.2  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   4.2  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    22   5.6  
EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic hor...    21   7.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.4  

>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 597 RVGSELQFNHT*GSYVLPVIIPGGDPAAGPWI 502
           R+  E+QF  + G Y++ + IP G      W+
Sbjct: 56  RLACEIQFVRSMGYYLIQIYIPSGLIVIISWV 87


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 79  PHSPP*RGSNDHRRLMVELPPPASRSGC 162
           P  PP           +E P PASRS C
Sbjct: 212 PKIPPAEFPTTSSSSALESPDPASRSSC 239


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 79  PHSPP*RGSNDHRRLMVELPPPASRSGC 162
           P  PP           +E P PASRS C
Sbjct: 212 PKIPPAEFPTTSSSSALESPNPASRSSC 239


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 79  PHSPP*RGSNDHRRLMVELPPPASRSGC 162
           P  PP           +E P PASRS C
Sbjct: 1   PKIPPAEFPTTSSSSALESPNPASRSSC 28


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 79  PHSPP*RGSNDHRRLMVELPPPASRSGC 162
           P  PP           +E P PASRS C
Sbjct: 1   PKIPPAEFPTTSSSSALESPNPASRSSC 28


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 129 YHQPSMIVRSP 97
           +HQP +++RSP
Sbjct: 72  FHQPVLLIRSP 82


>EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic
           hormone 1 protein.
          Length = 73

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 315 GSSSFSNAAHCKSSVRFDL*IFIXIIMRYF 226
           GSS+ S+A +CK  V   + I+  I + +F
Sbjct: 32  GSSAGSDANNCKEPVETIMLIYKIIQVSFF 61


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 350 SLSQMRSLYYCEGLHRFLTQHIVSPQYD 267
           S ++ RSLY   G H  + + +  P+ D
Sbjct: 147 SFARGRSLYDSRGRHSEIVETVYDPRED 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,062
Number of Sequences: 336
Number of extensions: 2912
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)