Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0712.Seq
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1091 - 26001129-26001181,26001292-26001325,26001339-260014...    30   2.1  
01_06_1152 + 34939884-34941824                                         28   6.3  
03_02_0191 - 6270591-6271364,6271458-6272168                           28   8.3  

>12_02_1091 -
           26001129-26001181,26001292-26001325,26001339-26001437,
           26002327-26002369,26002389-26002494,26002776-26002818,
           26003526-26003579,26003831-26003911,26003997-26004119,
           26004197-26004846,26004928-26005554,26005633-26005870,
           26006082-26006258,26006373-26006723,26006824-26007111,
           26008340-26008462,26008551-26009007,26009115-26009263,
           26009466-26009489
          Length = 1239

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 440 TVTVVWSPLSLRRVKTRKRVCIHGPAAGSPPGMMTGKT*EP 562
           ++T+   PL   RV+ R R  +H P   SPPG+   +T  P
Sbjct: 511 SITLFSGPLG--RVQERIRTPVHAPEPSSPPGISVHETPSP 549


>01_06_1152 + 34939884-34941824
          Length = 646

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 546 PVIIPGGDPAAGPWIQTRFRVLTRLNDSGDHTTVTVRLRY 427
           P  + GGD +  PW   R R LTRL   G H      LR+
Sbjct: 13  PAAVAGGDDSLEPW-SARVRTLTRL---GRHREALALLRH 48


>03_02_0191 - 6270591-6271364,6271458-6272168
          Length = 494

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 5/99 (5%)
 Frame = +2

Query: 227 KYLIIXIMNIHKSNRTEDLQCAALENDEDPHSNIKTSFDSNFSNG---HSKFATQATTRV 397
           KY ++ ++  HK       +C   E DE  HS I  S +     G    S   T     +
Sbjct: 291 KYRLMHVVRTHKGADDRAYRCVYEEEDEQGHSGISLSKELMAIAGDALKSNITTIGPLVL 350

Query: 398 P-SEQVVCVLSYL-KRTVTVVWSPLSLRRVKTRKRVCIH 508
           P SEQ++     + ++ +   W P         +  CIH
Sbjct: 351 PMSEQLLFFFRLVGRKLINKKWKPYIPDFKLAFEHFCIH 389


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,684,522
Number of Sequences: 37544
Number of extensions: 334677
Number of successful extensions: 810
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)