Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0712.Seq
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39216| Best HMM Match : WD40 (HMM E-Value=1.1e-14)                  30   2.1  
SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24)          29   4.9  
SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7)               29   4.9  

>SB_39216| Best HMM Match : WD40 (HMM E-Value=1.1e-14)
          Length = 867

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 305 DEDPHSNIKTSFDSNFSNGHSKFATQATTRVPSEQ 409
           D+D   N  + FD NFS+  S     +  R+P  Q
Sbjct: 438 DDDEWMNFSSQFDGNFSDAFSGICINSDARIPEYQ 472


>SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24)
          Length = 1001

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 33   ELTIEMIHNHSDSDNTPLSPVKGIERSSKADGR 131
            ++T+    NH+ S  +PLSP +G + S K  G+
Sbjct: 933  DVTLVKTENHNPSFQSPLSPTRGKKPSVKKKGK 965


>SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7)
          Length = 2372

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 132 FYHQPSMIVRSPSRGRVGCCRCLSGCGSF 46
           F  +PS   R P+R R GCC C+ GC  F
Sbjct: 301 FLWEPSE--RHPNR-RHGCCACVGGCNFF 326


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,212,656
Number of Sequences: 59808
Number of extensions: 381209
Number of successful extensions: 1128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)