Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0712.Seq
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    30   1.9  
U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF024502-3|AAB70373.1|  836|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    27   9.9  
U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifyi...    27   9.9  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      27   9.9  

>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
 Frame = +2

Query: 296 LENDEDPHSNIKTSFDSNFSNGHSKFATQATTR-----VPSEQVVCVLSYLKRTVTVVW- 457
           ++N+E P +  KTS  +N     S F      +     VP  + + V   L R+  V W 
Sbjct: 163 IKNNETPRNFFKTSIINNLEVSESNFLNFELEKSIFLTVPCPRELIVEKKLSRSALVSWS 222

Query: 458 SPLSLRRVKTRKRVCIHGPAAGSPPG 535
           SP       ++  VC+ G      PG
Sbjct: 223 SPEESFVAVSQYHVCVDGTVRAIVPG 248


>U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical
           protein F56D3.1 protein.
          Length = 441

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 565 LRFLCFTCHHPRRRPRG 515
           +R  C TC  PRRRP G
Sbjct: 359 VRIFCVTCQRPRRRPAG 375


>AF024502-3|AAB70373.1|  836|Caenorhabditis elegans Hypothetical
           protein M151.3 protein.
          Length = 836

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 308 EDPHSNIKTSFDSNFSNGHSKFATQATTRVPSEQVVCVLSYLKR 439
           E P ++ + SF  NF N    F+T  T    +E+   V S+  R
Sbjct: 329 EAPQTSYQESFAHNFENSEPLFSTPITASTTAEEPPQVFSFHSR 372


>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -3

Query: 660  AFXKLXNCYDNXIRXRCQFV*RVGSELQFNHT*GSYVLPVIIPGGD 523
            AF ++  CYD  +    + + R  + ++F H   +Y +P +   GD
Sbjct: 870  AFTEMYRCYDKILPCGTKEIARTKNAIRFPHRFRTYNIPQVYGPGD 915


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -3

Query: 660  AFXKLXNCYDNXIRXRCQFV*RVGSELQFNHT*GSYVLPVIIPGGD 523
            AF ++  CYD  +    + + R  + ++F H   +Y +P +   GD
Sbjct: 870  AFTEMYRCYDKILPCGTKEIARTKNAIRFPHRFRTYNIPQVYGPGD 915


>U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifying
           k (potassium)channel family protein 1 protein.
          Length = 505

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +2

Query: 314 PHSNIKTSFDSN-FSNGHSKFATQATTRVPSEQVVCVLSYLKRTVTVVWSPLSLRRVKTR 490
           P ++ ++S +S  FSN HSKF T+A T      ++C  + + +  +   SP  +RR + +
Sbjct: 437 PLNHFQSSSNSPVFSNNHSKFNTEAVT--CEAGMLCPPTIVVQCPSTCASPNHMRRTRNQ 494


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -3

Query: 660  AFXKLXNCYDNXIRXRCQFV*RVGSELQFNHT*GSYVLPVIIPGGD 523
            AF ++  CYD  +    + + R  + ++F H   +Y +P +   GD
Sbjct: 870  AFTEMYRCYDKILPCGTKEIARTKNAIRFPHRFRTYNIPQVYGPGD 915


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,490,274
Number of Sequences: 27780
Number of extensions: 268376
Number of successful extensions: 641
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)