Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0712.Seq
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.0  
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ...    28   5.2  
At5g10250.1 68418.m01190 phototropic-responsive protein, putativ...    28   6.9  

>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = +2

Query: 227 KYLIIXIMNIHKSNRTEDLQCAALENDEDPHSNIKTSFDSNFSNGHSKFATQATT-RV-P 400
           KY ++ ++  HK       +   L  D D    +  S D      H+  A  AT  R+ P
Sbjct: 293 KYQLMQLVRTHKGMEDTSYKSIELREDRDGKQGLYVSRDVMEVGRHALKANIATLGRLEP 352

Query: 401 SEQVVCVLSYLKRTVTVVWSPLSL 472
           S + +CVL+  K+ +  +   L L
Sbjct: 353 SFEHICVLASSKKVLDDIHKDLKL 376


>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
           protein 
          Length = 987

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 260 KSNRTEDLQCAALENDEDPHSNIKTSFDSNFSNGHSK 370
           K    +  +  +LEND   H N+  + D++ ++ HSK
Sbjct: 706 KQKHRQRSRSRSLENDNGSHENVDVAQDNDLNSRHSK 742


>At5g10250.1 68418.m01190 phototropic-responsive protein, putative
           similar to root phototropism RPT2 [Arabidopsis thaliana]
           gi|6959488|gb|AAF33112, a signal transducer of
           phototropic response PMID:10662859
          Length = 607

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 463 W*PHDG-HRSLEIR*NTHDLFARHPRGRLCRKL 368
           W  HDG +R++++   TH   + H R RLC+ +
Sbjct: 421 WKCHDGLYRAIDMFLKTHPSLSDHDRRRLCKTM 453


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,637,292
Number of Sequences: 28952
Number of extensions: 251379
Number of successful extensions: 610
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)