Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0711.Seq
         (839 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1; ...    37   0.55 
UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular organ...    37   0.55 
UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: L...    37   0.55 
UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep: Bet...    37   0.55 
UniRef50_A2E822 Cluster: Putative uncharacterized protein; n=1; ...    34   5.1  
UniRef50_Q9LHK2 Cluster: Genomic DNA, chromosome 3, P1 clone: MM...    33   8.9  

>UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1;
           Erwinia amylovora|Rep: Putative uncharacterized protein
           - Erwinia amylovora (Fire blight bacteria)
          Length = 123

 Score = 37.1 bits (82), Expect = 0.55
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = +1

Query: 721 ENPGVTQLNRLGSXPPFSXSW 783
           ENPGVTQLNRL + PPF+ SW
Sbjct: 78  ENPGVTQLNRLAAHPPFA-SW 97


>UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular
           organisms|Rep: LacZ-alpha peptide - Escherichia coli
          Length = 90

 Score = 37.1 bits (82), Expect = 0.55
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = +1

Query: 721 ENPGVTQLNRLGSXPPFSXSW 783
           ENPGVTQLNRL + PPF+ SW
Sbjct: 32  ENPGVTQLNRLAAHPPFA-SW 51


>UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: LacZ
           protein - Phage M13mp18
          Length = 102

 Score = 37.1 bits (82), Expect = 0.55
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = +1

Query: 721 ENPGVTQLNRLGSXPPFSXSW 783
           ENPGVTQLNRL + PPF+ SW
Sbjct: 36  ENPGVTQLNRLAAHPPFA-SW 55


>UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep:
           Beta-galactosidase - Escherichia coli (strain K12)
          Length = 1024

 Score = 37.1 bits (82), Expect = 0.55
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = +1

Query: 721 ENPGVTQLNRLGSXPPFSXSW 783
           ENPGVTQLNRL + PPF+ SW
Sbjct: 18  ENPGVTQLNRLAAHPPFA-SW 37


>UniRef50_A2E822 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 176

 Score = 33.9 bits (74), Expect = 5.1
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
 Frame = -2

Query: 289 ILTLFRF-YLLLPFHISLINVI--KY*YALTQLLENSYTSSANASLDF-MNIASFISSKV 122
           ILT  ++ Y  +  +I ++N I  KY ++   LL++ Y S  +  L   ++I S ISS+V
Sbjct: 54  ILTAIQYNYGSVALYIKILNQILAKYAFSYKNLLQDRYISGISQRLRLNISINSDISSQV 113

Query: 121 KFNRG 107
            FNRG
Sbjct: 114 DFNRG 118


>UniRef50_Q9LHK2 Cluster: Genomic DNA, chromosome 3, P1 clone:
           MMF12; n=9; root|Rep: Genomic DNA, chromosome 3, P1
           clone: MMF12 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 1213

 Score = 33.1 bits (72), Expect = 8.9
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = +1

Query: 628 SPLHRGPGTQFAL**VVLQFHWPSFTNVVTGENPGVTQLNRLGSXPPFSXSWPXISGRGP 807
           S  H G GT +     V +F+ P+F     G++PG ++L +LG+    S      S + P
Sbjct: 7   SACHVGYGTSYWAHSFVFRFNGPTFNIGSPGQSPGSSRLLQLGAAGSASRLRSSSSKKPP 66

Query: 808 HPIR 819
            P+R
Sbjct: 67  EPLR 70


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 708,485,573
Number of Sequences: 1657284
Number of extensions: 13170530
Number of successful extensions: 26131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26125
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73373641369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)