Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0711.Seq
         (839 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    25   0.75 
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    25   0.99 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   5.3  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   7.0  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 659 NWVPGPRCSGEVWVVLDWLIVAVG 588
           +W+  P C+    V+LDWL   +G
Sbjct: 104 SWIASPACTELEVVMLDWLGKMIG 127


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 511 STLLSFHYQEKEQGVFFSNAYILD*APTATISQSRTTQTSPLHRGPGTQ 657
           S +LS  + E E+    SN       P  T + +RTT T+     P T+
Sbjct: 136 SPILSNRFGENEEADAASNVISSTPLPPTTSTTTRTTLTTKFTTKPSTK 184


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = -3

Query: 270 FICYCRFTFH*LMSLNINMH 211
           ++ +C F FH ++ +N+ +H
Sbjct: 667 WLFHCHFLFHIVIGMNLIIH 686


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 839 CATVGEGRIGCGPLPLIXGQLXEK 768
           CA  G G+     LP+I   L +K
Sbjct: 201 CAQTGSGKTAAFMLPIIHNLLSDK 224


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,388
Number of Sequences: 336
Number of extensions: 3660
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)