Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0711.Seq
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    29   1.1  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    28   1.9  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    28   1.9  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    28   1.9  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    28   1.9  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    27   4.4  
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    26   5.8  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    26   7.6  

>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 671 HYRANWVPGPRCSGEVWV 618
           HY  + VP P  SGE+WV
Sbjct: 208 HYNGHGVPMPTASGEIWV 225


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 535 DNETIIA*IQQAENPVNQNGGVIARLTHYCVEPFAIS*KPGAEKRLENK 389
           DN T++  ++  E     + G+  ++T Y  +P  I  KPG     +NK
Sbjct: 107 DNLTLVKEVRIKEEKAKDDEGLEKKITKYTSQPVDIHWKPGKSLFRKNK 155


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 713 TTFVNDGQWNCNTTHYRANWVPGPRCSGEVWVVLDWL 603
           T FV++G W        A+ +PG    G  W  + WL
Sbjct: 266 TVFVDNGYWQKAIAANPASALPGYILGGLAWFAIPWL 302


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 283 TLFRFYLLLPFHISLINVIKY*YALTQLLENSYTSSANASLDFMNIASFIS 131
           T+F  Y   PF I  +N+I      T++  N   +   A +D++N A  +S
Sbjct: 259 TMFSCYCEEPFTIEPVNIISEHNGCTRVTPNLNPTCFKADIDYLNEACGLS 309


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +1

Query: 1   VFFFFF*NVGYLLVRIIFENVWNSTI 78
           +F+FF  NV Y+ V++I+  +W +++
Sbjct: 350 IFYFFLLNVSYMFVQVIY-GLWTNSL 374


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 376 LPTFIYFPTFFLPQVSTISRKVLRSNASTGR*LRHFDLRD 495
           LP+  YFP ++      I  K++R+ A TG+ L   D  D
Sbjct: 40  LPSKRYFPDYYQIIQKPICYKMMRNKAKTGKYLSMGDFYD 79


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 466 R*LRHFDLRDSRPVESTLLSFHYQ 537
           R LRH ++RD RP ES +++ H Q
Sbjct: 186 RCLRH-EIRDIRPPESVVMAMHQQ 208


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -1

Query: 779 LXEKGGXLPRRLSWVTPGFSPVTTFVNDGQWNCNTTHYRAN-WVPG 645
           L E  G +P  +  V P    VTT ++ G    NTT   A+  VPG
Sbjct: 128 LAEASGTVPGTVEVVEPLAGTVTTTIHSGSVEYNTTLATASGTVPG 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,961,709
Number of Sequences: 5004
Number of extensions: 55697
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)