Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0711.Seq
         (839 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81142-2|CAB03504.1|  337|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z67990-6|CAA91937.1|  199|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>Z81142-2|CAB03504.1|  337|Caenorhabditis elegans Hypothetical
           protein ZK1037.5 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = +2

Query: 245 NVKRQ*QIKSE*S*YVVPTYL*MNKLIRELELFKFEFTEIRLCIYLPSFIFQPFFCPRFL 424
           NV+ Q +I SE + ++  T   +++ IR L+L KFE   ++  + L        + PRF 
Sbjct: 213 NVQGQKRINSEFADFLFKT---LSEPIRSLQLDKFECVVLKTMVLLSQSFPSQLYLPRFE 269

Query: 425 RYRE 436
             R+
Sbjct: 270 ENRK 273


>Z67990-6|CAA91937.1|  199|Caenorhabditis elegans Hypothetical
           protein F02D10.6 protein.
          Length = 199

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 325 YELIHL*VGRYDILTLFRFYLLLPFHISLINVIKY*YAL 209
           + L+H+    Y + TL   Y+++PFHISL  + ++ Y +
Sbjct: 76  FRLLHMCYNVYILYTLG--YMIVPFHISLYFLFEFTYTV 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,455,165
Number of Sequences: 27780
Number of extensions: 322737
Number of successful extensions: 631
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)