Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0711.Seq
         (839 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03860.1 68418.m00358 malate synthase, putative strong simila...    33   0.24 
At3g08850.1 68416.m01029 transducin family protein / WD-40 repea...    28   8.9  

>At5g03860.1 68418.m00358 malate synthase, putative strong
           similarity to glyoxysomal malate synthase from Brassica
           napus [SP|P13244]
          Length = 562

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 743 SWVTPGFSPVTTFVNDGQWNC 681
           S   PGF P T F+ DG W+C
Sbjct: 70  SGAVPGFDPSTKFIRDGDWSC 90


>At3g08850.1 68416.m01029 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein mip1
           (SP:P87141) [Schizosaccharomyces pombe]; contains Pfam
           PF00400: WD domain, G-beta repeat (5 copies, 1 weak)
          Length = 1344

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 671 HYRANWVPGPRCSGEVWV 618
           HY  + VP P  +GE+WV
Sbjct: 198 HYNGHGVPKPTANGEIWV 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,167,148
Number of Sequences: 28952
Number of extensions: 283739
Number of successful extensions: 544
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)