Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0710.Seq
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    29   1.2  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    28   2.0  
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    27   3.6  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    26   6.2  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.2  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   6.2  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    26   6.2  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   6.2  

>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +3

Query: 303 KFMSS-WESNRVYFKIFNPKYNQRLKMGDPVKDDERKVFSSDDATDSTSQWYLQAMNH 473
           KF+ + +E  +  FKI++     RL++     D  RK+  S D+ + +++W+LQ ++H
Sbjct: 425 KFIENDFEKMKRLFKIYD-----RLRIQLKGIDQSRKLDFSPDSEEKSTKWFLQQIDH 477


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 464 DESQRRPFIFHIQSQYSQALKIGKDV-VNNEDFRIYGESED 583
           +E +RR FI HI S  +    +G  V +N E F  + + +D
Sbjct: 111 NEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKD 151


>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 482 VAFVIHRLQVPLTCAV 435
           +AFV H L++P++CAV
Sbjct: 11  LAFVAHALEIPISCAV 26


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 157 LEFRLILDDKKDCKIINKHDDLYMTL 234
           LE+ L+L  +   K+IN HD ++ TL
Sbjct: 457 LEWVLLLQRRTGGKLINMHDPIFQTL 482


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 375 KMGDPVKDDERKVFSSDDATDSTSQWYLQAMNHKGDLL 488
           ++GD VK+ + +   + +  DSTS+W L   N  G  +
Sbjct: 562 EIGDYVKELDEESKKAIENKDSTSEWLLHLYNFFGSAI 599


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +1

Query: 1   KRCEQLQSEPDGSYIIKNTVTELLNNAESNTINFSYKLWTTGHQNIVQSCFPLEFRLILD 180
           K  E+L +  +   ++ N+V   LN+      NF Y +W+    N  QS   L + L  D
Sbjct: 803 KMNEELSTTDEAVKLLANSV---LNDVHPRVPNFRYFIWSVPMNNWFQSLVWL-YTLSFD 858

Query: 181 DK 186
           +K
Sbjct: 859 EK 860


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
 Frame = +3

Query: 216 RSVHDSEQGSRPKGDRD-AYGDEDDHKNSWKFMSSWESNRVYFKIFNPKY-NQRLKMGDP 389
           RS   S +G   + +R  A+ D+D+   S+    S         + + K  N+R K  D 
Sbjct: 257 RSSSYSRRGDSYRSNRSRAHDDDDEDDYSFSRSKSLSRKTAGGSLRSSKMDNRRSKYADT 316

Query: 390 VK---------DDERKVFSSDDATDSTSQW 452
                      +DE  V+SSD +T+S+SQ+
Sbjct: 317 PSPRRSRSYSDEDEESVYSSDVSTESSSQF 346


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +3

Query: 231 SEQGSRPKGDRDAYGDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQRLKMGDPVKDDERK 410
           S Q +  KG++ +  D D   +  + ++  ++N +     N   + +L    P  +DE++
Sbjct: 721 SRQPTDDKGEQVSNADVDSGLSKTERLTIQQTNEIKHVPTNTTSSVKLPQ-QPSNEDEKE 779

Query: 411 VFSSDDATDSTS 446
             ++ D  DSTS
Sbjct: 780 RITTADYADSTS 791


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,504,010
Number of Sequences: 5004
Number of extensions: 70785
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)