Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0710.Seq
         (888 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_62| Best HMM Match : Peptidase_M14 (HMM E-Value=2.7e-34)            31   0.94 
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_33318| Best HMM Match : EGF (HMM E-Value=7.5e-05)                   30   2.9  
SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  

>SB_62| Best HMM Match : Peptidase_M14 (HMM E-Value=2.7e-34)
          Length = 235

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
 Frame = +3

Query: 273 GDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQRLK-MGDPVKDDERKVFSSDDATDSTS- 446
           G  D H  S  +M+SW  NR Y     P YN ++K  G    +  RKV+ +      +S 
Sbjct: 105 GYMDIHAYSQLWMTSWGFNRAY----PPAYNTKVKPAGQKAVEALRKVYGTHYRLGPSSI 160

Query: 447 ----QWYLQAMNHKGDLLFFIFN 503
                 YL   + K + LFFI N
Sbjct: 161 IICPSVYLSFRSDKIEKLFFILN 183


>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 273 GDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQRLKMGDPVKD--DERKVFSSDDATDST 443
           GD+D  K   + ++ W    V+   F  K  + L +G PV+     +K    DD+ DS+
Sbjct: 96  GDKDTAKGLERLLNIWSERGVFELSFIEKIRKGLAIGSPVESPPPSKKSRIEDDSKDSS 154


>SB_33318| Best HMM Match : EGF (HMM E-Value=7.5e-05)
          Length = 220

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
 Frame = -1

Query: 483 GRLCDSSPAGTIDLCCL*HRQMRTLYAHRPSQDHPFSNVDCISG*RF*NKLCSIPTRT*T 304
           G+ CD+S A    +C L   ++R   A      H   N +     +   +  SIP+ T T
Sbjct: 33  GKSCDTSKASIQTICNLKLVRVRKSKA----SIHTICNSNLYVSKKV--RPASIPSETLT 86

Query: 303 SNCSYGRPRRH-MRLYHLLV*ILAQSHVQIVMLVNNFTVLLIV*YQSEL*WETT 145
             C    PR++   L+HL   I+   HV+  M VN +T+  +V Y SE  W T+
Sbjct: 87  CTC----PRKYGQHLHHLQPYIV---HVRESM-VNIYTIRNLVLYMSEKVWSTS 132


>SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 279 EDDHKNSWKFMSSWESNRVYFKIF-NPKYNQRLKMGDPVKDDERKV-FSSDDATD 437
           E +++  ++    W  + V    + N +YN+ +K  D   D+E ++ +  DD TD
Sbjct: 70  EIEYERKYETRVDWLYSTVGIPYYGNSRYNRPIKKNDLYSDEEEEIDYKDDDCTD 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,862,001
Number of Sequences: 59808
Number of extensions: 523416
Number of successful extensions: 1199
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)