Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0710.Seq
         (888 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036772-1|AAH36772.1|  838|Homo sapiens G protein-coupled recep...    31   5.6  
BC013576-1|AAH13576.1|  838|Homo sapiens G protein-coupled recep...    31   5.6  
AL035427-3|CAI43060.1|  838|Homo sapiens G protein-coupled recep...    31   5.6  
AK096067-1|BAC04692.1|  655|Homo sapiens protein ( Homo sapiens ...    31   5.6  

>BC036772-1|AAH36772.1|  838|Homo sapiens G protein-coupled receptor
           associated sorting protein 2 protein.
          Length = 838

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
 Frame = +3

Query: 216 RSVHDSEQGSRPKGDRDAY-----GDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQRLKM 380
           R+ H +   SRP+  ++AY     G ED+  N + F     +N     +F P+  +   +
Sbjct: 259 RAKHQTNPRSRPRSKQEAYVDSWSGSEDEASNPFSFWVGENTN----NLFRPRVREEANI 314

Query: 381 GDPVKDDERKVFSSDDATDSTSQ-WYL 458
              ++ +    F S+   +   Q W L
Sbjct: 315 RSKLRTNREDCFESESEDEFYKQSWVL 341


>BC013576-1|AAH13576.1|  838|Homo sapiens G protein-coupled receptor
           associated sorting protein 2 protein.
          Length = 838

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
 Frame = +3

Query: 216 RSVHDSEQGSRPKGDRDAY-----GDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQRLKM 380
           R+ H +   SRP+  ++AY     G ED+  N + F     +N     +F P+  +   +
Sbjct: 259 RAKHQTNPRSRPRSKQEAYVDSWSGSEDEASNPFSFWVGENTN----NLFRPRVREEANI 314

Query: 381 GDPVKDDERKVFSSDDATDSTSQ-WYL 458
              ++ +    F S+   +   Q W L
Sbjct: 315 RSKLRTNREDCFESESEDEFYKQSWVL 341


>AL035427-3|CAI43060.1|  838|Homo sapiens G protein-coupled receptor
           associated sorting protein 2 protein.
          Length = 838

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
 Frame = +3

Query: 216 RSVHDSEQGSRPKGDRDAY-----GDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQRLKM 380
           R+ H +   SRP+  ++AY     G ED+  N + F     +N     +F P+  +   +
Sbjct: 259 RAKHQTNPRSRPRSKQEAYVDSWSGSEDEASNPFSFWVGENTN----NLFRPRVREEANI 314

Query: 381 GDPVKDDERKVFSSDDATDSTSQ-WYL 458
              ++ +    F S+   +   Q W L
Sbjct: 315 RSKLRTNREDCFESESEDEFYKQSWVL 341


>AK096067-1|BAC04692.1|  655|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38748 fis, clone KIDNE2012440. ).
          Length = 655

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
 Frame = +3

Query: 216 RSVHDSEQGSRPKGDRDAY-----GDEDDHKNSWKFMSSWESNRVYFKIFNPKYNQRLKM 380
           R+ H +   SRP+  ++AY     G ED+  N + F     +N     +F P+  +   +
Sbjct: 146 RAKHQTNPRSRPRSKQEAYVDSWSGSEDEASNPFSFWVGENTN----NLFRPRVREEANI 201

Query: 381 GDPVKDDERKVFSSDDATDSTSQ-WYL 458
              ++ +    F S+   +   Q W L
Sbjct: 202 RSKLRTNREDCFESESEDEFYKQSWVL 228


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,557,788
Number of Sequences: 237096
Number of extensions: 2381948
Number of successful extensions: 4180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4180
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)