Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0710.Seq
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical p...    29   4.4  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    29   4.4  
AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A serine...    29   4.4  
Z92834-11|CAB07388.2|  594|Caenorhabditis elegans Hypothetical p...    28   7.8  
Z81592-4|CAB04728.1|  436|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z69360-6|CAA93282.1|  599|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical
           protein F35G12.3a protein.
          Length = 1077

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 228 DSEQGSRPKGDRDAYGDEDDHKNSWKFMSS 317
           D E GSRP  + D   D+DDH+    F SS
Sbjct: 760 DGEGGSRPLLEDDGLEDDDDHELISSFSSS 789


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
            protein Y11D7A.14 protein.
          Length = 1464

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +3

Query: 303  KFMSSWESNRVYFKIFNPKYNQR----LKMGDPVKDDERKV 413
            K M   E N   F +   KYN++    +KM D +++ ERK+
Sbjct: 899  KTMEEMEQNEEIFNVLERKYNEQHKKVMKMNDVLREYERKI 939


>AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A
           serine/threonine kinase protein.
          Length = 1077

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 228 DSEQGSRPKGDRDAYGDEDDHKNSWKFMSS 317
           D E GSRP  + D   D+DDH+    F SS
Sbjct: 760 DGEGGSRPLLEDDGLEDDDDHELISSFSSS 789


>Z92834-11|CAB07388.2|  594|Caenorhabditis elegans Hypothetical
           protein F39B2.8 protein.
          Length = 594

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +1

Query: 139 VQSCFPLEFRLILDDKKDCKIINKHDDLYMTLSKDLDQKVIETHMATR 282
           + SC P   R+  D+K D  + +   ++Y++  K ++   IE H + R
Sbjct: 546 IPSCSPQTKRIEEDEKSDLTVESSPHNIYLSNFKGVNVNSIEQHNSVR 593


>Z81592-4|CAB04728.1|  436|Caenorhabditis elegans Hypothetical
           protein T16G1.4 protein.
          Length = 436

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = +3

Query: 288 HKNSWKFMSSWESNRVYFKIFNPKYNQRLKMGDPVKDDERKVFSSDDATDSTSQW 452
           H + W     WE N   F +      Q + MG+P +D  R +  +    D  + W
Sbjct: 276 HGDLWSANILWEENEGKFLVSKVIDYQLIHMGNPAEDLVRLLLCTLSGADRQAHW 330


>Z69360-6|CAA93282.1|  599|Caenorhabditis elegans Hypothetical
           protein F25H8.6 protein.
          Length = 599

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = +1

Query: 118 TTGHQNIVQSCFPLEFRLILDDKKDCKIINKHDDLYMTLSKDLDQKVI 261
           TTG    ++SC   E++L+ + +++  I+   +     L +++++KVI
Sbjct: 158 TTGMIRHLRSCHVQEYQLVQEARQNSMIVKMEEKARAKLLREMNEKVI 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,372,317
Number of Sequences: 27780
Number of extensions: 398840
Number of successful extensions: 1116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)