Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0710.Seq
         (888 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30290.1 68414.m03704 pentatricopeptide (PPR) repeat-containi...    31   1.0  
At5g67180.1 68418.m08469 AP2 domain-containing transcription fac...    28   7.2  

>At1g30290.1 68414.m03704 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 802

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
 Frame = +3

Query: 219 SVHDSEQGSRPKGDRDAYGDEDDHKNSWKFMSSWESNRV---------YFKIFNPKYNQR 371
           S   S+    P+ + D+   EDDH   ++ +   +S+ +         + +I NP++N+ 
Sbjct: 30  STSSSKHPHGPEIEGDSSSQEDDHFGEFRQLGFGKSSALNATSVGDPEFGEIRNPRFNEI 89

Query: 372 LKMGDPVKDDERKVFSSDDATD 437
            ++G+   D+E  V S D+  D
Sbjct: 90  DELGEDDDDEEGNVTSGDELDD 111


>At5g67180.1 68418.m08469 AP2 domain-containing transcription
           factor, putative similar to (SP:P47927) Floral homeotic
           protein APETALA2. [Mouse-ear cress] {Arabidopsis
           thaliana}
          Length = 352

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 530 GKDVVNNEDFRIYGESEDAGREAT 601
           GKD V N D ++Y E ED   E T
Sbjct: 237 GKDAVTNFDPKVYEEEEDLSSETT 260


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,112,191
Number of Sequences: 28952
Number of extensions: 365162
Number of successful extensions: 858
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)