Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0707.Seq
(741 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P45104 Cluster: Ribosomal large subunit pseudouridine s... 89 1e-16
UniRef50_Q87NB7 Cluster: Ribosomal large subunit pseudouridine s... 87 6e-16
UniRef50_Q6LPB2 Cluster: Pseudouridine synthase; n=7; Bacteria|R... 80 5e-14
UniRef50_A5WGV6 Cluster: Pseudouridine synthase; n=5; Moraxellac... 71 2e-11
UniRef50_Q82X60 Cluster: Pseudouridine synthase; n=3; Betaproteo... 64 3e-09
UniRef50_Q31GA0 Cluster: Pseudouridine synthase; n=2; Gammaprote... 62 2e-08
UniRef50_Q9HZ55 Cluster: Ribosomal large subunit pseudouridine s... 62 2e-08
UniRef50_A5CX60 Cluster: Pseudouridine synthase; n=1; Candidatus... 61 2e-08
UniRef50_A1K7C2 Cluster: Pseudouridine synthase; n=2; Rhodocycla... 61 3e-08
UniRef50_Q9ABJ7 Cluster: Pseudouridine synthase; n=2; Caulobacte... 60 7e-08
UniRef50_Q63TP5 Cluster: Pseudouridine synthase; n=24; Proteobac... 56 9e-07
UniRef50_Q7WHF9 Cluster: Pseudouridine synthase; n=5; Betaproteo... 56 1e-06
UniRef50_A7IJY1 Cluster: RNA-binding S4 domain protein; n=1; Xan... 56 1e-06
UniRef50_Q2LSY4 Cluster: Pseudouridine synthase; n=1; Syntrophus... 55 2e-06
UniRef50_A6GNL7 Cluster: Pseudouridine synthase; n=1; Limnobacte... 55 2e-06
UniRef50_Q8G6A9 Cluster: Pseudouridine synthase; n=2; Bifidobact... 54 3e-06
UniRef50_A5P3J5 Cluster: Pseudouridine synthase; n=1; Methylobac... 54 3e-06
UniRef50_Q3AVD5 Cluster: Pseudouridine synthase; n=3; Cyanobacte... 54 4e-06
UniRef50_Q1VMW4 Cluster: Pseudouridine synthase; n=1; Psychrofle... 53 6e-06
UniRef50_Q1D5Q2 Cluster: Pseudouridine synthase; n=3; Cystobacte... 53 9e-06
UniRef50_Q89AL1 Cluster: Ribosomal large subunit pseudouridine s... 53 9e-06
UniRef50_Q9RVX5 Cluster: Pseudouridine synthase; n=4; Deinococci... 52 1e-05
UniRef50_Q1Q1Q0 Cluster: Pseudouridine synthase; n=1; Candidatus... 52 1e-05
UniRef50_A3UFV9 Cluster: Pseudouridine synthase; n=1; Oceanicaul... 52 1e-05
UniRef50_Q55578 Cluster: Uncharacterized RNA pseudouridine synth... 52 1e-05
UniRef50_Q8GDU7 Cluster: Pseudouridine synthase; n=6; Bacteria|R... 52 2e-05
UniRef50_Q8XZV9 Cluster: Pseudouridine synthase; n=24; Proteobac... 51 3e-05
UniRef50_Q7NSN4 Cluster: Pseudouridine synthase; n=7; Betaproteo... 51 3e-05
UniRef50_Q7UUP0 Cluster: Pseudouridine synthase; n=1; Pirellula ... 51 3e-05
UniRef50_Q24V73 Cluster: Pseudouridine synthase; n=3; Bacteria|R... 51 3e-05
UniRef50_Q0AS26 Cluster: Pseudouridine synthase; n=1; Maricaulis... 50 6e-05
UniRef50_Q9PAP2 Cluster: Ribosomal large subunit pseudouridine s... 50 6e-05
UniRef50_Q2JD11 Cluster: Pseudouridine synthase; n=6; Actinomyce... 50 8e-05
UniRef50_A7DBQ1 Cluster: RNA-binding S4 domain protein; n=3; Alp... 50 8e-05
UniRef50_A3JIZ1 Cluster: Pseudouridine synthase; n=1; Marinobact... 50 8e-05
UniRef50_Q12AB3 Cluster: Pseudouridine synthase; n=7; Comamonada... 49 1e-04
UniRef50_A5EVQ2 Cluster: Pseudouridine synthase; n=1; Dichelobac... 49 1e-04
UniRef50_Q8T866 Cluster: Similar to Bradyrhizobium japonicum. Bl... 49 1e-04
UniRef50_P45848 Cluster: Uncharacterized protein yciQ; n=10; Ent... 49 1e-04
UniRef50_A6NZ18 Cluster: Pseudouridine synthase; n=1; Bacteroide... 49 1e-04
UniRef50_A0NV51 Cluster: Pseudouridine synthase; n=1; Stappia ag... 49 1e-04
UniRef50_Q8YQF8 Cluster: Pseudouridine synthase; n=8; Cyanobacte... 48 2e-04
UniRef50_Q8FTK7 Cluster: Pseudouridine synthase; n=6; Corynebact... 48 2e-04
UniRef50_A5V220 Cluster: Pseudouridine synthase; n=4; Bacteria|R... 48 2e-04
UniRef50_Q8X7C1 Cluster: Putative uncharacterized protein; n=2; ... 48 2e-04
UniRef50_Q6SI36 Cluster: Pseudouridine synthase; n=2; Bacteria|R... 48 2e-04
UniRef50_Q1IJT7 Cluster: Pseudouridine synthase; n=1; Acidobacte... 48 2e-04
UniRef50_Q0C3M6 Cluster: Pseudouridine synthase; n=1; Hyphomonas... 48 2e-04
UniRef50_A4SY81 Cluster: Pseudouridine synthase; n=12; Proteobac... 48 2e-04
UniRef50_A1WE21 Cluster: Pseudouridine synthase; n=1; Verminephr... 48 2e-04
UniRef50_Q983N1 Cluster: Pseudouridine synthase; n=3; Alphaprote... 48 3e-04
UniRef50_A7HC79 Cluster: Pseudouridine synthase; n=1; Anaeromyxo... 48 3e-04
UniRef50_A0H5Q4 Cluster: Pseudouridine synthase; n=1; Chloroflex... 48 3e-04
UniRef50_O05668 Cluster: Uncharacterized RNA pseudouridine synth... 48 3e-04
UniRef50_A0JV58 Cluster: Pseudouridine synthase; n=14; Actinomyc... 47 4e-04
UniRef50_Q83IR6 Cluster: Ribosomal large subunit pseudouridine s... 47 4e-04
UniRef50_Q7VBH8 Cluster: Pseudouridine synthase; n=1; Prochloroc... 47 6e-04
UniRef50_Q8RIU2 Cluster: Pseudouridine synthase; n=6; Bacteria|R... 47 6e-04
UniRef50_Q7X2Z6 Cluster: Pseudouridine synthase; n=3; Bacteria|R... 47 6e-04
UniRef50_Q11L93 Cluster: Pseudouridine synthase; n=10; Alphaprot... 47 6e-04
UniRef50_A2SHC0 Cluster: Pseudouridine synthase; n=1; Methylibiu... 47 6e-04
UniRef50_P14588 Cluster: Uncharacterized protein 3' to Asp-rich ... 47 6e-04
UniRef50_Q60CV8 Cluster: Pseudouridine synthase; n=8; Rhizobiale... 46 7e-04
UniRef50_Q0LMS3 Cluster: Pseudouridine synthase; n=2; Bacteria|R... 46 7e-04
UniRef50_Q1GFA6 Cluster: Pseudouridine synthase; n=10; Rhodobact... 46 0.001
UniRef50_A6C4P7 Cluster: Pseudouridine synthase; n=1; Planctomyc... 46 0.001
UniRef50_A3ZQL4 Cluster: Pseudouridine synthase; n=1; Blastopire... 46 0.001
UniRef50_P42395 Cluster: Ribosomal large subunit pseudouridine s... 46 0.001
UniRef50_Q74DB4 Cluster: Pseudouridine synthase; n=5; Desulfurom... 45 0.002
UniRef50_O32069 Cluster: YtzG protein; n=1; Bacillus subtilis|Re... 45 0.002
UniRef50_Q3J464 Cluster: Pseudouridine synthase; n=2; Rhodobacte... 44 0.003
UniRef50_Q6NAL9 Cluster: Pseudouridine synthase; n=34; Alphaprot... 44 0.004
UniRef50_A4ECD6 Cluster: Pseudouridine synthase; n=1; Collinsell... 44 0.004
UniRef50_A6EPE0 Cluster: Pseudouridine synthase; n=1; unidentifi... 44 0.005
UniRef50_P35159 Cluster: Ribosomal large subunit pseudouridine s... 44 0.005
UniRef50_Q7MVB7 Cluster: S4 domain protein; n=1; Porphyromonas g... 43 0.007
UniRef50_A6VZH0 Cluster: Pseudouridine synthase; n=26; Bacteria|... 43 0.007
UniRef50_Q73PC4 Cluster: Pseudouridine synthase; n=1; Treponema ... 43 0.009
UniRef50_Q1GU97 Cluster: Pseudouridine synthase; n=5; Sphingomon... 43 0.009
UniRef50_Q688C2 Cluster: Pseudouridine synthase; n=1; Mycoplasma... 42 0.021
UniRef50_Q97I05 Cluster: Pseudouridine synthase; n=20; Bacteria|... 41 0.028
UniRef50_Q04F57 Cluster: Pseudouridine synthase; n=2; Oenococcus... 41 0.028
UniRef50_A0L6G3 Cluster: RNA-binding S4 domain protein precursor... 41 0.028
UniRef50_P14589 Cluster: Uncharacterized protein 3' to Asp-rich ... 41 0.028
UniRef50_Q9A788 Cluster: Pseudouridine synthase; n=21; Proteobac... 41 0.037
UniRef50_Q6AQ24 Cluster: Related to ribosomal large subunit pseu... 41 0.037
UniRef50_A6ES27 Cluster: Pseudouridylate synthase; n=2; Bacteroi... 41 0.037
UniRef50_A1RN24 Cluster: Pseudouridine synthase; n=11; Shewanell... 41 0.037
UniRef50_UPI00006CCA31 Cluster: conserved hypothetical protein; ... 40 0.049
UniRef50_Q5NQ05 Cluster: Pseudouridylate synthase; n=1; Zymomona... 40 0.049
UniRef50_A5CSG9 Cluster: Pseudouridine synthase; n=3; Actinobact... 40 0.049
UniRef50_A1IDN1 Cluster: Pseudouridine synthase; n=1; Candidatus... 40 0.064
UniRef50_Q8R5S6 Cluster: Pseudouridine synthase; n=14; Clostridi... 40 0.085
UniRef50_A6PPE5 Cluster: Pseudouridine synthase; n=1; Victivalli... 40 0.085
UniRef50_A1UU09 Cluster: RNA pseudouridine synthase; n=1; Barton... 40 0.085
UniRef50_A1S9T3 Cluster: Pseudouridine synthase; n=1; Shewanella... 40 0.085
UniRef50_Q6AR36 Cluster: Related to pseudouridine synthase; n=1;... 39 0.11
UniRef50_Q67P81 Cluster: Pseudouridine synthase; n=3; Bacteria|R... 39 0.11
UniRef50_A7AB62 Cluster: Putative uncharacterized protein; n=1; ... 39 0.11
UniRef50_A6LIW8 Cluster: Putative pseudouridine synthase family ... 39 0.11
UniRef50_A1G013 Cluster: Pseudouridine synthase; n=2; Proteobact... 39 0.11
UniRef50_Q01DI0 Cluster: Propable 16S pseudouridylate synthase; ... 39 0.11
UniRef50_UPI00015B96EC Cluster: UPI00015B96EC related cluster; n... 39 0.15
UniRef50_O66829 Cluster: Uncharacterized RNA pseudouridine synth... 39 0.15
UniRef50_O83472 Cluster: Putative uncharacterized protein; n=1; ... 38 0.20
UniRef50_A6G735 Cluster: Pseudouridine synthase; n=1; Plesiocyst... 38 0.20
UniRef50_A5IXL5 Cluster: Pseudouridine synthase; n=3; Mycoplasma... 38 0.20
UniRef50_A3HY40 Cluster: Pseudouridine synthase; n=1; Algoriphag... 38 0.20
UniRef50_Q0F269 Cluster: Pseudouridine synthase; n=1; Mariprofun... 38 0.26
UniRef50_Q090H6 Cluster: Ribosomal large subunit pseudouridine s... 38 0.26
UniRef50_A1K3P0 Cluster: Pseudouridylate synthase; n=3; Betaprot... 38 0.26
UniRef50_A0M7H0 Cluster: Ribosomal large subunit pseudouridine s... 38 0.26
UniRef50_O67444 Cluster: Uncharacterized RNA pseudouridine synth... 38 0.26
UniRef50_Q8F3V8 Cluster: Pseudouridine synthase; n=4; Leptospira... 38 0.34
UniRef50_Q26G32 Cluster: Ribosomal large subunit pseudouridine s... 38 0.34
UniRef50_A7CZ84 Cluster: RNA-binding S4 domain protein; n=1; Opi... 38 0.34
UniRef50_A0CY18 Cluster: Chromosome undetermined scaffold_30, wh... 38 0.34
UniRef50_Q21MN5 Cluster: Pseudouridine synthase; n=3; Alteromona... 37 0.60
UniRef50_A5ZYR1 Cluster: Pseudouridine synthase; n=1; Ruminococc... 37 0.60
UniRef50_Q68WJ1 Cluster: Uncharacterized RNA pseudouridine synth... 37 0.60
UniRef50_Q8A0Z9 Cluster: Pseudouridine synthase; n=9; cellular o... 36 0.79
UniRef50_Q6YQY5 Cluster: Pseudouridine synthase; n=3; Candidatus... 36 0.79
UniRef50_Q6LNM8 Cluster: Pseudouridine synthase; n=23; Vibrionac... 36 0.79
UniRef50_A7PI03 Cluster: Chromosome chr13 scaffold_17, whole gen... 36 0.79
UniRef50_Q8TYA5 Cluster: Predicted RNA-binding protein containin... 36 0.79
UniRef50_Q9WYA2 Cluster: Pseudouridine synthase; n=3; Bacteria|R... 36 1.0
UniRef50_Q14P18 Cluster: Pseudouridine synthase; n=1; Spiroplasm... 36 1.0
UniRef50_A5TWE7 Cluster: Pseudouridine synthase; n=3; Fusobacter... 36 1.0
UniRef50_A1ZI67 Cluster: Pseudouridine synthase; n=1; Microscill... 36 1.0
UniRef50_Q9A9V6 Cluster: RNA pseudouridylate synthase, putative;... 36 1.4
UniRef50_Q2S2G3 Cluster: Pseudouridine synthase; n=1; Salinibact... 36 1.4
UniRef50_A6EJI4 Cluster: Pseudouridine synthase; n=1; Pedobacter... 36 1.4
UniRef50_A1VDC0 Cluster: Pseudouridine synthase; n=4; Desulfovib... 36 1.4
UniRef50_Q7NQJ1 Cluster: Pseudouridylate synthase; n=1; Chromoba... 35 1.8
UniRef50_Q8R5V5 Cluster: Pseudouridine synthase; n=3; Firmicutes... 35 2.4
UniRef50_A6PUD8 Cluster: Cation-transporting ATPase; n=1; Victiv... 35 2.4
UniRef50_A3ESK0 Cluster: Pseudouridine synthase; n=2; Leptospiri... 35 2.4
UniRef50_Q9PE28 Cluster: Pseudouridine synthase; n=5; Xylella fa... 34 3.2
UniRef50_A5KLG0 Cluster: Pseudouridine synthase; n=2; Ruminococc... 34 3.2
UniRef50_Q8Y1L6 Cluster: Pseudouridine synthase; n=41; Betaprote... 34 4.2
UniRef50_Q6F0R7 Cluster: 23S rRNA pseudouridine synthase; n=3; M... 34 4.2
UniRef50_Q21ST9 Cluster: RNA-binding S4; n=1; Rhodoferax ferrire... 34 4.2
UniRef50_A7HJ83 Cluster: RNA-binding S4 domain protein; n=1; Fer... 34 4.2
UniRef50_Q016A8 Cluster: Homology to unknown gene; n=2; Ostreoco... 34 4.2
UniRef50_O51155 Cluster: Uncharacterized RNA pseudouridine synth... 34 4.2
UniRef50_Q8KF53 Cluster: Pseudouridine synthase; n=10; Chlorobia... 33 5.6
UniRef50_Q8ZT37 Cluster: Molybdopterin-guanine dinucleotide bios... 33 5.6
UniRef50_UPI00006A2770 Cluster: UPI00006A2770 related cluster; n... 33 7.4
UniRef50_Q470D4 Cluster: Pseudouridine synthase, Rsu; n=9; Betap... 33 7.4
UniRef50_A6WK95 Cluster: Pseudouridine synthase; n=8; Shewanella... 33 7.4
UniRef50_A5FR81 Cluster: Pseudouridine synthase; n=3; Dehalococc... 33 7.4
UniRef50_Q5FKW8 Cluster: Pseudouridine synthase; n=3; Lactobacil... 33 9.7
UniRef50_Q0AX41 Cluster: Pseudouridine synthase; n=1; Syntrophom... 33 9.7
UniRef50_A5Z689 Cluster: Putative uncharacterized protein; n=1; ... 33 9.7
UniRef50_A5KLK6 Cluster: Putative uncharacterized protein; n=4; ... 33 9.7
UniRef50_A2RKH7 Cluster: Pseudouridine synthase; n=5; Streptococ... 33 9.7
>UniRef50_P45104 Cluster: Ribosomal large subunit pseudouridine
synthase B; n=95; Proteobacteria|Rep: Ribosomal large
subunit pseudouridine synthase B - Haemophilus
influenzae
Length = 357
Score = 89.0 bits (211), Expect = 1e-16
Identities = 42/67 (62%), Positives = 56/67 (83%)
Frame = -3
Query: 208 KATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRI 29
+A+ + + EKLQKVLARAG GSRREIE++I AGRVSV+GKIA LGDR++V G+K+RI
Sbjct: 66 RASNQPKAEGEKLQKVLARAGQGSRREIETMIAAGRVSVEGKIATLGDRIDVHSGVKVRI 125
Query: 28 DGHLISV 8
DG +I++
Sbjct: 126 DGQIINL 132
>UniRef50_Q87NB7 Cluster: Ribosomal large subunit pseudouridine
synthase B; n=11; Gammaproteobacteria|Rep: Ribosomal
large subunit pseudouridine synthase B - Vibrio
parahaemolyticus
Length = 312
Score = 86.6 bits (205), Expect = 6e-16
Identities = 41/60 (68%), Positives = 53/60 (88%)
Frame = -3
Query: 184 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 5
MSEKLQKVLARAGHGSRREIES+I++GRVSV+G +AKLG+R+E + +RIDGH++S +
Sbjct: 1 MSEKLQKVLARAGHGSRREIESLIKSGRVSVNGVVAKLGERLEDESSV-VRIDGHIVSAK 59
>UniRef50_Q6LPB2 Cluster: Pseudouridine synthase; n=7; Bacteria|Rep:
Pseudouridine synthase - Photobacterium profundum
(Photobacterium sp. (strain SS9))
Length = 377
Score = 80.2 bits (189), Expect = 5e-14
Identities = 41/61 (67%), Positives = 50/61 (81%)
Frame = -3
Query: 190 SSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLIS 11
S MSEKLQKVLARAG GSRREIE +I++GRVS+DG +AKLGDR++ L +RIDGH I
Sbjct: 2 SIMSEKLQKVLARAGQGSRREIELMIQSGRVSIDGVVAKLGDRLDDFSVL-VRIDGHKID 60
Query: 10 V 8
+
Sbjct: 61 L 61
>UniRef50_A5WGV6 Cluster: Pseudouridine synthase; n=5;
Moraxellaceae|Rep: Pseudouridine synthase -
Psychrobacter sp. PRwf-1
Length = 345
Score = 71.3 bits (167), Expect = 2e-11
Identities = 37/73 (50%), Positives = 50/73 (68%)
Frame = -3
Query: 223 YQTPGKATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPG 44
YQ T ++ +EKLQK LAR G GSRR++E +I+AGRVS++ K A +GDRVE G
Sbjct: 28 YQFAAPTTSASTAGTEKLQKALARMGLGSRRQMEEVIKAGRVSINQKPASIGDRVE--QG 85
Query: 43 LKIRIDGHLISVR 5
+IR+DG LI +
Sbjct: 86 DEIRVDGRLIKYK 98
>UniRef50_Q82X60 Cluster: Pseudouridine synthase; n=3;
Betaproteobacteria|Rep: Pseudouridine synthase -
Nitrosomonas europaea
Length = 292
Score = 64.1 bits (149), Expect = 3e-09
Identities = 35/59 (59%), Positives = 42/59 (71%)
Frame = -3
Query: 181 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 5
+ +LQK+LAR G GSRREIE +I AGRVS++G AK GDR PG IRIDG +I R
Sbjct: 33 TSRLQKLLARNGLGSRREIEDMIAAGRVSINGVTAKPGDR--AGPGDMIRIDGKIIRFR 89
>UniRef50_Q31GA0 Cluster: Pseudouridine synthase; n=2;
Gammaproteobacteria|Rep: Pseudouridine synthase -
Thiomicrospira crunogena (strain XCL-2)
Length = 317
Score = 61.7 bits (143), Expect = 2e-08
Identities = 29/48 (60%), Positives = 35/48 (72%)
Frame = -3
Query: 178 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKI 35
EKLQK+LAR G GSRRE+E +I G V V+GK+A LGDR T LK+
Sbjct: 18 EKLQKILARGGFGSRREVEKLISQGLVKVNGKVATLGDRAFPTDTLKV 65
>UniRef50_Q9HZ55 Cluster: Ribosomal large subunit pseudouridine
synthase B; n=46; Gammaproteobacteria|Rep: Ribosomal
large subunit pseudouridine synthase B - Pseudomonas
aeruginosa
Length = 386
Score = 61.7 bits (143), Expect = 2e-08
Identities = 33/61 (54%), Positives = 41/61 (67%)
Frame = -3
Query: 184 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 5
+ EKLQKVLAR G GSRR++E I GRV+V+G +A LG RV+ I +DGHLI
Sbjct: 12 VGEKLQKVLARLGVGSRRDVEVWIAEGRVNVNGSVASLGQRVDSHDA--ITVDGHLIRRE 69
Query: 4 E 2
E
Sbjct: 70 E 70
>UniRef50_A5CX60 Cluster: Pseudouridine synthase; n=1; Candidatus
Vesicomyosocius okutanii HA|Rep: Pseudouridine synthase
- Vesicomyosocius okutanii subsp. Calyptogena okutanii
(strain HA)
Length = 241
Score = 61.3 bits (142), Expect = 2e-08
Identities = 28/59 (47%), Positives = 44/59 (74%)
Frame = -3
Query: 184 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISV 8
M+ +LQK++A AG+GSRR +E +IE GR+ V+ KIA +GD+ E+T ++IDG I++
Sbjct: 1 MANRLQKLIANAGYGSRRWVERLIEQGRIEVNNKIAIIGDKTEITS--LVKIDGRKINL 57
>UniRef50_A1K7C2 Cluster: Pseudouridine synthase; n=2;
Rhodocyclaceae|Rep: Pseudouridine synthase - Azoarcus
sp. (strain BH72)
Length = 356
Score = 60.9 bits (141), Expect = 3e-08
Identities = 30/58 (51%), Positives = 44/58 (75%)
Frame = -3
Query: 178 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 5
E+LQKVLA+AG SRREIE ++ AGR+SV+G A LG + + PG +++++G LI +R
Sbjct: 91 ERLQKVLAQAGVASRREIEELVVAGRISVNGLPASLGQK--IGPGDRVKLNGKLIPLR 146
>UniRef50_Q9ABJ7 Cluster: Pseudouridine synthase; n=2;
Caulobacter|Rep: Pseudouridine synthase - Caulobacter
crescentus (Caulobacter vibrioides)
Length = 421
Score = 59.7 bits (138), Expect = 7e-08
Identities = 29/59 (49%), Positives = 42/59 (71%)
Frame = -3
Query: 178 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 2
E++ K LARAG SRRE+E +IEAGRV+++GK+ V+V PG + +DG L++ RE
Sbjct: 35 ERVAKALARAGVASRREVERLIEAGRVAINGKVLTT-PAVKVAPGDFLTVDGQLVAERE 92
>UniRef50_Q63TP5 Cluster: Pseudouridine synthase; n=24;
Proteobacteria|Rep: Pseudouridine synthase -
Burkholderia pseudomallei (Pseudomonas pseudomallei)
Length = 554
Score = 56.0 bits (129), Expect = 9e-07
Identities = 32/66 (48%), Positives = 42/66 (63%)
Frame = -3
Query: 220 QTPGKATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGL 41
QT K + KL KVLA AG GSRRE+E +I AGRVSV+G+ A +G R + P
Sbjct: 169 QTQPKRVLSPDDDAPKLHKVLAEAGMGSRREMEELIIAGRVSVNGEPAHIGQR--IMPTD 226
Query: 40 KIRIDG 23
++RI+G
Sbjct: 227 QVRING 232
>UniRef50_Q7WHF9 Cluster: Pseudouridine synthase; n=5;
Betaproteobacteria|Rep: Pseudouridine synthase -
Bordetella bronchiseptica (Alcaligenes bronchisepticus)
Length = 593
Score = 55.6 bits (128), Expect = 1e-06
Identities = 30/55 (54%), Positives = 40/55 (72%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLIS 11
KL KVLA AG GSRRE+E +I AGRVSV+G+ A +G R V P ++R++G I+
Sbjct: 125 KLHKVLADAGIGSRREMEELIVAGRVSVNGEPAHIGQR--VAPNDQVRVNGKPIA 177
>UniRef50_A7IJY1 Cluster: RNA-binding S4 domain protein; n=1;
Xanthobacter autotrophicus Py2|Rep: RNA-binding S4
domain protein - Xanthobacter sp. (strain Py2)
Length = 620
Score = 55.6 bits (128), Expect = 1e-06
Identities = 32/67 (47%), Positives = 42/67 (62%)
Frame = -3
Query: 202 TPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDG 23
TP +E++ KV+ARAG GSRREIE IEAGRV+V+G++ V VT I +DG
Sbjct: 22 TPAAPKEAERIAKVVARAGLGSRREIEEWIEAGRVAVNGEVLTT-PAVTVTAEDAITVDG 80
Query: 22 HLISVRE 2
+ RE
Sbjct: 81 APLPERE 87
>UniRef50_Q2LSY4 Cluster: Pseudouridine synthase; n=1; Syntrophus
aciditrophicus SB|Rep: Pseudouridine synthase -
Syntrophus aciditrophicus (strain SB)
Length = 251
Score = 55.2 bits (127), Expect = 2e-06
Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Frame = -3
Query: 184 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISV 8
M E+LQK+LAR+G SRR+ E +I GRVSV+ +I + LG + ++ +IR+DG LI
Sbjct: 1 MEERLQKILARSGVASRRKAEEMIREGRVSVNSEIVRELGSKADIERD-EIRVDGKLICA 59
Query: 7 RE 2
E
Sbjct: 60 EE 61
>UniRef50_A6GNL7 Cluster: Pseudouridine synthase; n=1; Limnobacter
sp. MED105|Rep: Pseudouridine synthase - Limnobacter sp.
MED105
Length = 458
Score = 55.2 bits (127), Expect = 2e-06
Identities = 30/57 (52%), Positives = 41/57 (71%)
Frame = -3
Query: 184 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLI 14
++ KL KVLA +G GSRRE+E +I AGRVSV+ + A LG R V P ++R++G LI
Sbjct: 67 LAPKLHKVLADSGMGSRREMEELIVAGRVSVNAEPAHLGQR--VLPTDQVRVNGKLI 121
>UniRef50_Q8G6A9 Cluster: Pseudouridine synthase; n=2;
Bifidobacterium|Rep: Pseudouridine synthase -
Bifidobacterium longum
Length = 256
Score = 54.4 bits (125), Expect = 3e-06
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = -3
Query: 226 AYQTPGKATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVT 50
AY KA +S+ +LQK+LA+AG GSRR+ E +I GRV VDG+ + +LG RV+
Sbjct: 4 AYSRAAKAQDDSNSI--RLQKLLAQAGFGSRRKCEDMITEGRVEVDGELVTELGTRVD-P 60
Query: 49 PGLKIRIDGHLISV 8
++R+DG + V
Sbjct: 61 HKQQVRVDGSRVRV 74
>UniRef50_A5P3J5 Cluster: Pseudouridine synthase; n=1;
Methylobacterium sp. 4-46|Rep: Pseudouridine synthase -
Methylobacterium sp. 4-46
Length = 569
Score = 54.4 bits (125), Expect = 3e-06
Identities = 29/72 (40%), Positives = 45/72 (62%)
Frame = -3
Query: 217 TPGKATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLK 38
+P + P ++ E++ KV+ARAG SRR+ E++I GRVS++G+ V V PG +
Sbjct: 27 SPARPAPSETAEPERIAKVMARAGVASRRDAEAMILEGRVSLNGETLTT-PAVTVGPGDR 85
Query: 37 IRIDGHLISVRE 2
I +DG + VRE
Sbjct: 86 IVVDGEPLPVRE 97
>UniRef50_Q3AVD5 Cluster: Pseudouridine synthase; n=3;
Cyanobacteria|Rep: Pseudouridine synthase -
Synechococcus sp. (strain CC9902)
Length = 247
Score = 54.0 bits (124), Expect = 4e-06
Identities = 30/60 (50%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Frame = -3
Query: 178 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDG-HLISVRE 2
++LQK++A AG SRR E ++AGRV+VDG++A LGD+ + L I +DG LISV+E
Sbjct: 4 QRLQKLMAAAGLCSRRRGEDWLQAGRVTVDGRVASLGDQADPNSQL-IEVDGVPLISVQE 62
>UniRef50_Q1VMW4 Cluster: Pseudouridine synthase; n=1; Psychroflexus
torquis ATCC 700755|Rep: Pseudouridine synthase -
Psychroflexus torquis ATCC 700755
Length = 242
Score = 53.2 bits (122), Expect = 6e-06
Identities = 26/47 (55%), Positives = 35/47 (74%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKI 35
+LQK+LARAG+GSRR E II +G+V V+G++AKLG V +KI
Sbjct: 5 RLQKILARAGYGSRRGCEEIISSGKVIVNGEVAKLGCVVNSDDEIKI 51
>UniRef50_Q1D5Q2 Cluster: Pseudouridine synthase; n=3;
Cystobacterineae|Rep: Pseudouridine synthase -
Myxococcus xanthus (strain DK 1622)
Length = 745
Score = 52.8 bits (121), Expect = 9e-06
Identities = 29/58 (50%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Frame = -3
Query: 181 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLIS 11
+E+LQK LARAG SRR E +I AGRV+V+ K + +LG RVE L + +DG L++
Sbjct: 3 AERLQKYLARAGVASRRHAEELITAGRVAVNNKTVTELGSRVEPGTDL-VTVDGTLVT 59
>UniRef50_Q89AL1 Cluster: Ribosomal large subunit pseudouridine
synthase B; n=1; Buchnera aphidicola (Baizongia
pistaciae)|Rep: Ribosomal large subunit pseudouridine
synthase B - Buchnera aphidicola subsp. Baizongia
pistaciae
Length = 247
Score = 52.8 bits (121), Expect = 9e-06
Identities = 23/55 (41%), Positives = 39/55 (70%)
Frame = -3
Query: 184 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGH 20
M EK+QK+LAR G+GSRR IES+I++ V ++ ++ K+G R+ + K+ I+ +
Sbjct: 1 MCEKIQKILARHGYGSRRYIESLIKSHSVKINDEVVKVGQRISINVIQKVIINNN 55
>UniRef50_Q9RVX5 Cluster: Pseudouridine synthase; n=4;
Deinococci|Rep: Pseudouridine synthase - Deinococcus
radiodurans
Length = 257
Score = 52.4 bits (120), Expect = 1e-05
Identities = 28/58 (48%), Positives = 38/58 (65%)
Frame = -3
Query: 181 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISV 8
+E+L K LARAG SRR E +I AGRV+V+G+ A LG V T +R+DG L+ +
Sbjct: 3 AERLHKRLARAGIASRRAAEELIRAGRVTVNGQTAGLGQGVNDTD--DVRVDGRLVEL 58
>UniRef50_Q1Q1Q0 Cluster: Pseudouridine synthase; n=1; Candidatus
Kuenenia stuttgartiensis|Rep: Pseudouridine synthase -
Candidatus Kuenenia stuttgartiensis
Length = 260
Score = 52.4 bits (120), Expect = 1e-05
Identities = 27/44 (61%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Frame = -3
Query: 184 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVE 56
M E+LQKVLA AG GSRRE E++I AGRV+VDG ++ LG V+
Sbjct: 1 MQERLQKVLASAGIGSRRECENVILAGRVTVDGERVTALGATVD 44
>UniRef50_A3UFV9 Cluster: Pseudouridine synthase; n=1; Oceanicaulis
alexandrii HTCC2633|Rep: Pseudouridine synthase -
Oceanicaulis alexandrii HTCC2633
Length = 354
Score = 52.0 bits (119), Expect = 1e-05
Identities = 30/71 (42%), Positives = 39/71 (54%)
Frame = -3
Query: 217 TPGKATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLK 38
TP E++ KVLA AG SRRE E +IE GRVSV+G+I + +V G
Sbjct: 4 TPSTPDTPEEEGGERIAKVLAHAGIASRREAERLIEKGRVSVNGEILRT-PAFKVMAGDD 62
Query: 37 IRIDGHLISVR 5
+R+DG I R
Sbjct: 63 VRVDGESIGQR 73
>UniRef50_Q55578 Cluster: Uncharacterized RNA pseudouridine synthase
slr0361; n=18; Cyanobacteria|Rep: Uncharacterized RNA
pseudouridine synthase slr0361 - Synechocystis sp.
(strain PCC 6803)
Length = 249
Score = 52.0 bits (119), Expect = 1e-05
Identities = 26/57 (45%), Positives = 39/57 (68%)
Frame = -3
Query: 184 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLI 14
M+E++QK+L++ G SRR E +I AGRVSV+GK+A LGD+ + + +DG I
Sbjct: 1 MAERIQKLLSQWGIASRRHAEEMILAGRVSVNGKVANLGDKADPQQDF-LSVDGKQI 56
>UniRef50_Q8GDU7 Cluster: Pseudouridine synthase; n=6; Bacteria|Rep:
Pseudouridine synthase - Heliobacillus mobilis
Length = 253
Score = 51.6 bits (118), Expect = 2e-05
Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = -3
Query: 190 SSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLI 14
++ +E+LQKVLA G SRRE E I AGRV V+G + +LG RVE + I++DG +
Sbjct: 7 TTTAERLQKVLAAHGLASRREAEDWIRAGRVQVNGTVVTELGLRVEEGKDV-IQVDGKPL 65
Query: 13 SVRE 2
+VRE
Sbjct: 66 TVRE 69
>UniRef50_Q8XZV9 Cluster: Pseudouridine synthase; n=24;
Proteobacteria|Rep: Pseudouridine synthase - Ralstonia
solanacearum (Pseudomonas solanacearum)
Length = 598
Score = 51.2 bits (117), Expect = 3e-05
Identities = 27/54 (50%), Positives = 38/54 (70%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLI 14
KL K+LA AG GSRR++E +I GRVSV+G A +G R + P ++R++G LI
Sbjct: 215 KLHKILADAGLGSRRDMEDLILQGRVSVNGLPAHIGQR--ILPTDQVRVNGKLI 266
>UniRef50_Q7NSN4 Cluster: Pseudouridine synthase; n=7;
Betaproteobacteria|Rep: Pseudouridine synthase -
Chromobacterium violaceum
Length = 479
Score = 51.2 bits (117), Expect = 3e-05
Identities = 28/57 (49%), Positives = 39/57 (68%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 5
+LQK L+ +G GSRRE+E IEAG V+V+GK A LGD+ V P K+ + G I ++
Sbjct: 213 RLQKALSSSGVGSRREMEEWIEAGLVTVNGKKASLGDK--VGPQDKVLVKGDQIKLK 267
>UniRef50_Q7UUP0 Cluster: Pseudouridine synthase; n=1; Pirellula
sp.|Rep: Pseudouridine synthase - Rhodopirellula baltica
Length = 395
Score = 50.8 bits (116), Expect = 3e-05
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Frame = -3
Query: 232 TKAYQTPGKATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVE 56
+K + + K SS ++++ ++LA AG GSRR+ E +I GRV VDG+ I +LG V+
Sbjct: 8 SKPQRAKSSSKDKASS-AKRINQLLASAGFGSRRQCEELIREGRVDVDGETITELGTTVD 66
Query: 55 VTPGL-KIRIDGHLI 14
P L K+R+DG+ +
Sbjct: 67 --PDLQKVRVDGNYL 79
>UniRef50_Q24V73 Cluster: Pseudouridine synthase; n=3; Bacteria|Rep:
Pseudouridine synthase - Desulfitobacterium hafniense
(strain Y51)
Length = 257
Score = 50.8 bits (116), Expect = 3e-05
Identities = 29/58 (50%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Frame = -3
Query: 178 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISV 8
E+LQKVLA+AG SRR E II GRV V+G++ + LG +V T +I +DG L+S+
Sbjct: 16 ERLQKVLAQAGIASRRHAEEIILQGRVKVNGEVIRTLGTKVVSTD--RIVVDGRLLSI 71
>UniRef50_Q0AS26 Cluster: Pseudouridine synthase; n=1; Maricaulis
maris MCS10|Rep: Pseudouridine synthase - Maricaulis
maris (strain MCS10)
Length = 372
Score = 50.0 bits (114), Expect = 6e-05
Identities = 28/56 (50%), Positives = 34/56 (60%)
Frame = -3
Query: 181 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLI 14
SE++ K LARAG SRRE+E +IE GRV VDGK +VT I +DG I
Sbjct: 8 SERIAKFLARAGVASRREVERMIEGGRVKVDGKTLDT-PAFKVTGSEHIEVDGKRI 62
>UniRef50_Q9PAP2 Cluster: Ribosomal large subunit pseudouridine
synthase B; n=17; Gammaproteobacteria|Rep: Ribosomal
large subunit pseudouridine synthase B - Xylella
fastidiosa
Length = 476
Score = 50.0 bits (114), Expect = 6e-05
Identities = 27/54 (50%), Positives = 36/54 (66%)
Frame = -3
Query: 184 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDG 23
+ E+L KVLA+AG GSRR +E I G + V+G IA+LG + V G KI +DG
Sbjct: 25 LEERLHKVLAQAGLGSRRALEQRISNGLIKVNGDIAQLG--MSVKSGDKIELDG 76
>UniRef50_Q2JD11 Cluster: Pseudouridine synthase; n=6;
Actinomycetales|Rep: Pseudouridine synthase - Frankia
sp. (strain CcI3)
Length = 252
Score = 49.6 bits (113), Expect = 8e-05
Identities = 30/58 (51%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVR 5
+LQKVLA AG GSRR E +I AGRV VDG + + G RV+ L I +DG I R
Sbjct: 16 RLQKVLAAAGVGSRRHGEELIAAGRVRVDGTVVREQGRRVDPETAL-IEVDGERIVTR 72
>UniRef50_A7DBQ1 Cluster: RNA-binding S4 domain protein; n=3;
Alphaproteobacteria|Rep: RNA-binding S4 domain protein -
Methylobacterium extorquens PA1
Length = 669
Score = 49.6 bits (113), Expect = 8e-05
Identities = 27/68 (39%), Positives = 42/68 (61%)
Frame = -3
Query: 205 ATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRID 26
A P+G E++ K +ARAG SRR+ E++IEAGRV+++GK+ + VT +I +D
Sbjct: 17 AAPEG----ERIAKAIARAGIASRRDAEALIEAGRVTLNGKVL-TSPAINVTDADRITVD 71
Query: 25 GHLISVRE 2
+ RE
Sbjct: 72 DEPLPARE 79
>UniRef50_A3JIZ1 Cluster: Pseudouridine synthase; n=1; Marinobacter
sp. ELB17|Rep: Pseudouridine synthase - Marinobacter sp.
ELB17
Length = 367
Score = 49.6 bits (113), Expect = 8e-05
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Frame = -3
Query: 214 PGKATPKGSSM-----SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVT 50
PGK P+ + E++QK+LARAG GSRREIE ++AGR+ V+GK G + V+
Sbjct: 40 PGKPVPEALATLPVGGPERIQKLLARAGVGSRREIEGWMDAGRLLVNGKPVTPGQKATVS 99
Query: 49 PGLKIRIDGHLISV 8
+DG + V
Sbjct: 100 D--VFELDGKRLEV 111
>UniRef50_Q12AB3 Cluster: Pseudouridine synthase; n=7;
Comamonadaceae|Rep: Pseudouridine synthase - Polaromonas
sp. (strain JS666 / ATCC BAA-500)
Length = 544
Score = 49.2 bits (112), Expect = 1e-04
Identities = 26/57 (45%), Positives = 39/57 (68%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 5
KL KVLA+AG GSR E+E +I GR+SV+ + A +G R++ G ++++G I VR
Sbjct: 98 KLHKVLAQAGLGSRLEMEQLILEGRISVNAEPAHIGQRIQF--GDTVKVNGKPIRVR 152
>UniRef50_A5EVQ2 Cluster: Pseudouridine synthase; n=1; Dichelobacter
nodosus VCS1703A|Rep: Pseudouridine synthase -
Dichelobacter nodosus (strain VCS1703A)
Length = 266
Score = 49.2 bits (112), Expect = 1e-04
Identities = 21/46 (45%), Positives = 35/46 (76%)
Frame = -3
Query: 196 KGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRV 59
K + ++++QK LA G GSRR+IE+ I+ GR+ VDG++A+LG ++
Sbjct: 3 KKNDDAQRIQKYLAARGVGSRRQIETWIKEGRLKVDGRVAELGQKI 48
>UniRef50_Q8T866 Cluster: Similar to Bradyrhizobium japonicum.
Bll7495 protein; n=2; Dictyostelium discoideum|Rep:
Similar to Bradyrhizobium japonicum. Bll7495 protein -
Dictyostelium discoideum (Slime mold)
Length = 401
Score = 49.2 bits (112), Expect = 1e-04
Identities = 28/62 (45%), Positives = 39/62 (62%)
Frame = -3
Query: 193 GSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLI 14
G +E++QK+LARAG SRR+ E +I GRV V+GKI K+ + + V P I +D I
Sbjct: 133 GKIGTERIQKILARAGIASRRKAEELIIDGRVKVNGKIIKM-EEILVKPHDIITVDDKPI 191
Query: 13 SV 8
V
Sbjct: 192 KV 193
>UniRef50_P45848 Cluster: Uncharacterized protein yciQ; n=10;
Enterobacteriaceae|Rep: Uncharacterized protein yciQ -
Escherichia coli (strain K12)
Length = 631
Score = 49.2 bits (112), Expect = 1e-04
Identities = 22/22 (100%), Positives = 22/22 (100%)
Frame = -1
Query: 510 LFSLQTHLSCGANTSLLGRSYS 445
LFSLQTHLSCGANTSLLGRSYS
Sbjct: 594 LFSLQTHLSCGANTSLLGRSYS 615
Score = 48.4 bits (110), Expect = 2e-04
Identities = 23/31 (74%), Positives = 23/31 (74%)
Frame = -3
Query: 667 THWTFGXKGETRKXDYAXLGXAISANLGREW 575
TH KGETRK DYA LG AISANLGREW
Sbjct: 541 THSGRRRKGETRKLDYALLGWAISANLGREW 571
Score = 37.9 bits (84), Expect = 0.26
Identities = 22/48 (45%), Positives = 24/48 (50%)
Frame = -2
Query: 653 RRKGGNTETGLRVXRLXYIGKFGXGMXXTHCPSLSSAIRAPEIARNGV 510
RRKG + + G PSLSSAIRAPEIARNGV
Sbjct: 546 RRKGETRKLDYALLGWAISANLGREWALRIAPSLSSAIRAPEIARNGV 593
>UniRef50_A6NZ18 Cluster: Pseudouridine synthase; n=1; Bacteroides
capillosus ATCC 29799|Rep: Pseudouridine synthase -
Bacteroides capillosus ATCC 29799
Length = 238
Score = 48.8 bits (111), Expect = 1e-04
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = -3
Query: 178 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLI 14
E+L K+LA G SRRE++ ++ AGRV+ +G + + + GL +R+DG +
Sbjct: 2 ERLDKILASTGRWSRREVKELVRAGRVTANGAVVRSPEEKYQREGLDLRVDGQSV 56
>UniRef50_A0NV51 Cluster: Pseudouridine synthase; n=1; Stappia
aggregata IAM 12614|Rep: Pseudouridine synthase -
Stappia aggregata IAM 12614
Length = 520
Score = 48.8 bits (111), Expect = 1e-04
Identities = 27/65 (41%), Positives = 39/65 (60%)
Frame = -3
Query: 196 KGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHL 17
+ + E++ KV+AR G SRRE E IE GRV ++GK+ V VTP K+ +DG
Sbjct: 97 EANDRGERIAKVMARVGLCSRREAEVWIENGRVELNGKLLTT-PAVTVTPDDKVVVDGQP 155
Query: 16 ISVRE 2
+ +RE
Sbjct: 156 LPMRE 160
>UniRef50_Q8YQF8 Cluster: Pseudouridine synthase; n=8;
Cyanobacteria|Rep: Pseudouridine synthase - Anabaena sp.
(strain PCC 7120)
Length = 262
Score = 48.4 bits (110), Expect = 2e-04
Identities = 25/60 (41%), Positives = 37/60 (61%)
Frame = -3
Query: 184 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 5
M +LQKVLA+ G SRRE E +I RV ++G +A+LG +V + I +DG +S +
Sbjct: 1 MEARLQKVLAQWGIASRREAEEMIRRSRVQINGTLAELGQKVNPEKDI-ITVDGKSVSAQ 59
>UniRef50_Q8FTK7 Cluster: Pseudouridine synthase; n=6;
Corynebacterium|Rep: Pseudouridine synthase -
Corynebacterium efficiens
Length = 329
Score = 48.4 bits (110), Expect = 2e-04
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = -3
Query: 196 KGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKL-GDRVEVTPGLKIRIDGH 20
+ S +LQKVLA+AG SRR E +I+ GRV V+G+I G RV + IR+DG
Sbjct: 83 RNSGEGIRLQKVLAQAGVASRRHAEILIDNGRVEVNGRIVTTQGTRVNPNSDV-IRVDGV 141
Query: 19 LISVRE 2
I++ E
Sbjct: 142 RININE 147
>UniRef50_A5V220 Cluster: Pseudouridine synthase; n=4; Bacteria|Rep:
Pseudouridine synthase - Roseiflexus sp. RS-1
Length = 624
Score = 48.4 bits (110), Expect = 2e-04
Identities = 28/57 (49%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Frame = -3
Query: 181 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKL-GDRVEVTPGLKIRIDGHLI 14
+E+LQKVLA AG SRR+ E I AGRV V+GK+ ++ G RV+ +I +DG I
Sbjct: 3 AERLQKVLASAGIASRRDCEEYIAAGRVMVNGKVVRIPGTRVDPEHD-EILVDGRPI 58
>UniRef50_Q8X7C1 Cluster: Putative uncharacterized protein; n=2;
Enterobacteriaceae|Rep: Putative uncharacterized protein
- Escherichia coli O157:H7
Length = 527
Score = 48.0 bits (109), Expect = 2e-04
Identities = 22/31 (70%), Positives = 23/31 (74%)
Frame = -3
Query: 667 THWTFGXKGETRKXDYAXLGXAISANLGREW 575
TH KGETRK DYA LG A+SANLGREW
Sbjct: 441 THSGRRRKGETRKLDYALLGWAVSANLGREW 471
Score = 42.7 bits (96), Expect = 0.009
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = -1
Query: 510 LFSLQTHLSCGANTSLLGRSYS 445
LFSLQ HLS GANTSLLGRSYS
Sbjct: 494 LFSLQMHLSLGANTSLLGRSYS 515
Score = 32.7 bits (71), Expect = 9.7
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -2
Query: 653 RRKGGNTETGLRVXRLXYIGKFGXGMXXTHCPSLSSAIRAPEIARNGV 510
RRKG + + G PSL++A+RAPEIAR+GV
Sbjct: 446 RRKGETRKLDYALLGWAVSANLGREWVARITPSLTAAVRAPEIARSGV 493
>UniRef50_Q6SI36 Cluster: Pseudouridine synthase; n=2; Bacteria|Rep:
Pseudouridine synthase - uncultured bacterium 105
Length = 255
Score = 48.0 bits (109), Expect = 2e-04
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGL-KIRIDGHLI 14
+LQKVLA AG SRR E +IE GRV+V+G+ + KLG + + P L IR+DG +
Sbjct: 7 RLQKVLASAGISSRRAAERLIEVGRVTVNGRSVTKLGAKAD--PDLDDIRVDGRKV 60
>UniRef50_Q1IJT7 Cluster: Pseudouridine synthase; n=1; Acidobacteria
bacterium Ellin345|Rep: Pseudouridine synthase -
Acidobacteria bacterium (strain Ellin345)
Length = 680
Score = 48.0 bits (109), Expect = 2e-04
Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Frame = -3
Query: 181 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDG 23
SE+LQK++A AG SRR+ E ++ AGRV+V+G++ +LG + + IR+DG
Sbjct: 3 SERLQKIIAAAGMASRRKAEELVTAGRVTVNGEVKNELGSKADPETD-DIRVDG 55
>UniRef50_Q0C3M6 Cluster: Pseudouridine synthase; n=1; Hyphomonas
neptunium ATCC 15444|Rep: Pseudouridine synthase -
Hyphomonas neptunium (strain ATCC 15444)
Length = 305
Score = 48.0 bits (109), Expect = 2e-04
Identities = 23/41 (56%), Positives = 30/41 (73%)
Frame = -3
Query: 205 ATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGK 83
ATP S E++ K LARAG SRRE+E +IEAG V+V+G+
Sbjct: 29 ATPADWSEGERIAKYLARAGVASRREVERLIEAGEVTVNGQ 69
>UniRef50_A4SY81 Cluster: Pseudouridine synthase; n=12;
Proteobacteria|Rep: Pseudouridine synthase -
Polynucleobacter sp. QLW-P1DMWA-1
Length = 587
Score = 48.0 bits (109), Expect = 2e-04
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDG 23
KL KVLA G GSRR++E +I GRVSV+G A +G R+ T ++RI+G
Sbjct: 198 KLHKVLADVGMGSRRDMEDLIIQGRVSVNGLPAHIGQRIGPTD--QVRING 246
>UniRef50_A1WE21 Cluster: Pseudouridine synthase; n=1;
Verminephrobacter eiseniae EF01-2|Rep: Pseudouridine
synthase - Verminephrobacter eiseniae (strain EF01-2)
Length = 520
Score = 48.0 bits (109), Expect = 2e-04
Identities = 25/57 (43%), Positives = 39/57 (68%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 5
KL KVLA+AG GSR E+E +I GR+SV+ + A +G R++ G +++++G I R
Sbjct: 172 KLHKVLAQAGLGSRLEMEQLILEGRISVNNEPAHIGQRIQF--GDQVKVNGKPIRYR 226
>UniRef50_Q983N1 Cluster: Pseudouridine synthase; n=3;
Alphaproteobacteria|Rep: Pseudouridine synthase -
Rhizobium loti (Mesorhizobium loti)
Length = 546
Score = 47.6 bits (108), Expect = 3e-04
Identities = 30/69 (43%), Positives = 39/69 (56%)
Frame = -3
Query: 229 KAYQTPGKATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVT 50
KA P +AT + E++ K LARAG SRR+ E +I AGRV V+G+ A V
Sbjct: 84 KARPRPAEATEEAG---ERIAKRLARAGLASRRDAEELIAAGRVKVNGR-ALTSPAFNVM 139
Query: 49 PGLKIRIDG 23
PG I +DG
Sbjct: 140 PGDIIHLDG 148
>UniRef50_A7HC79 Cluster: Pseudouridine synthase; n=1;
Anaeromyxobacter sp. Fw109-5|Rep: Pseudouridine synthase
- Anaeromyxobacter sp. Fw109-5
Length = 354
Score = 47.6 bits (108), Expect = 3e-04
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = -3
Query: 196 KGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGH 20
KG +LQK LA AG SRR+ E +I AGRV V+ + + LG +V+ L + +DG
Sbjct: 6 KGGPDGVRLQKYLAEAGVASRRKAEELILAGRVKVNARAVTVLGSKVDPARDL-VTVDGR 64
Query: 19 LISVRE 2
L+S E
Sbjct: 65 LVSRSE 70
>UniRef50_A0H5Q4 Cluster: Pseudouridine synthase; n=1; Chloroflexus
aggregans DSM 9485|Rep: Pseudouridine synthase -
Chloroflexus aggregans DSM 9485
Length = 567
Score = 47.6 bits (108), Expect = 3e-04
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Frame = -3
Query: 178 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKL-GDRVEVTPGLKIRIDG 23
E+LQKVLA AG SRR+ E +I AGRV+V+G++ + G RV++ ++ +DG
Sbjct: 4 ERLQKVLASAGIASRRDCEELIAAGRVTVNGRVVTVPGTRVDLEHD-EVLVDG 55
>UniRef50_O05668 Cluster: Uncharacterized RNA pseudouridine synthase
ML1370; n=18; Actinomycetales|Rep: Uncharacterized RNA
pseudouridine synthase ML1370 - Mycobacterium leprae
Length = 256
Score = 47.6 bits (108), Expect = 3e-04
Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDG 23
+LQK+L+RAG SRR E +I GRV VDG++ + LG RV+ + +R+DG
Sbjct: 17 RLQKILSRAGIASRRAAEKLIIEGRVEVDGQLVRELGTRVDPDVSV-VRVDG 67
>UniRef50_A0JV58 Cluster: Pseudouridine synthase; n=14;
Actinomycetales|Rep: Pseudouridine synthase -
Arthrobacter sp. (strain FB24)
Length = 406
Score = 47.2 bits (107), Expect = 4e-04
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRE 2
+LQKV+A AG SRR E +I GRV VDGK + +LG RV+ + I +DG I + E
Sbjct: 169 RLQKVMASAGVASRRVCEEMISEGRVEVDGKVVTELGVRVDPKTAV-IHVDGLRIQLDE 226
>UniRef50_Q83IR6 Cluster: Ribosomal large subunit pseudouridine
synthase F; n=47; Bacteria|Rep: Ribosomal large subunit
pseudouridine synthase F - Shigella flexneri
Length = 290
Score = 47.2 bits (107), Expect = 4e-04
Identities = 25/60 (41%), Positives = 39/60 (65%)
Frame = -3
Query: 181 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 2
S +L K ++ +G SRRE + IE G V ++GK A +GD+V+ PG ++++G LI RE
Sbjct: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVK--PGDIVKVNGQLIEPRE 63
>UniRef50_Q7VBH8 Cluster: Pseudouridine synthase; n=1;
Prochlorococcus marinus|Rep: Pseudouridine synthase -
Prochlorococcus marinus
Length = 237
Score = 46.8 bits (106), Expect = 6e-04
Identities = 21/57 (36%), Positives = 41/57 (71%)
Frame = -3
Query: 184 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLI 14
M E+LQK+++ +G SR++ E++I+ RV ++ +IA LG++ ++ + IRID ++I
Sbjct: 1 MKERLQKIISNSGICSRKKAEALIDQKRVFINNEIASLGEKADILIDI-IRIDDYII 56
>UniRef50_Q8RIU2 Cluster: Pseudouridine synthase; n=6; Bacteria|Rep:
Pseudouridine synthase - Cytophaga johnsonae
(Flavobacterium johnsoniae)
Length = 304
Score = 46.8 bits (106), Expect = 6e-04
Identities = 23/55 (41%), Positives = 36/55 (65%)
Frame = -3
Query: 178 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLI 14
++L K + G+ SRRE + +IE GRV+++G A++G +V +IRIDG LI
Sbjct: 6 KRLNKFIGETGYCSRREADKLIEEGRVTINGAAAEMGTKVSSDD--EIRIDGKLI 58
>UniRef50_Q7X2Z6 Cluster: Pseudouridine synthase; n=3; Bacteria|Rep:
Pseudouridine synthase - uncultured Acidobacteria
bacterium
Length = 317
Score = 46.8 bits (106), Expect = 6e-04
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = -3
Query: 184 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLIS 11
M E+LQK++A AG SRR E +I AG V+V+GK + +LG + + I++ G LI+
Sbjct: 55 MEERLQKIIATAGIASRRHAEQLITAGEVTVNGKVVTELGTKADAQND-HIKVRGKLIN 112
>UniRef50_Q11L93 Cluster: Pseudouridine synthase; n=10;
Alphaproteobacteria|Rep: Pseudouridine synthase -
Mesorhizobium sp. (strain BNC1)
Length = 466
Score = 46.8 bits (106), Expect = 6e-04
Identities = 25/64 (39%), Positives = 37/64 (57%)
Frame = -3
Query: 193 GSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLI 14
G + E++ K LARAG SRR+ E++IEAGRV V+G++ V P +I +D +
Sbjct: 44 GRTDGERIAKRLARAGLASRRDAEAMIEAGRVKVNGRVLS-SPAFNVRPSDRIEVDDEPL 102
Query: 13 SVRE 2
E
Sbjct: 103 PAAE 106
>UniRef50_A2SHC0 Cluster: Pseudouridine synthase; n=1; Methylibium
petroleiphilum PM1|Rep: Pseudouridine synthase -
Methylibium petroleiphilum (strain PM1)
Length = 686
Score = 46.8 bits (106), Expect = 6e-04
Identities = 24/57 (42%), Positives = 39/57 (68%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 5
KL KVLA++G GSRR++E I G+V+V+ ++A +G R+ G +I +DG + +R
Sbjct: 236 KLHKVLAQSGIGSRRDMEQFILDGKVTVNDEVAHVGMRISY--GDRIAVDGKPVRLR 290
>UniRef50_P14588 Cluster: Uncharacterized protein 3' to Asp-rich and
His-rich proteins; n=1; Plasmodium falciparum (isolate
FCM17 / Senegal)|Rep: Uncharacterized protein 3' to
Asp-rich and His-rich proteins - Plasmodium falciparum
(isolate fcm17 / Senegal)
Length = 78
Score = 46.8 bits (106), Expect = 6e-04
Identities = 22/37 (59%), Positives = 22/37 (59%)
Frame = +3
Query: 366 KLVSINISLITSXXXXXXXXXXXXXXXNNFAPTNWYW 476
KLVSINISLITS NNFAPTNWYW
Sbjct: 41 KLVSINISLITSHHRLRHPRRRQHHHRNNFAPTNWYW 77
>UniRef50_Q60CV8 Cluster: Pseudouridine synthase; n=8;
Rhizobiales|Rep: Pseudouridine synthase - Brucella suis
Length = 598
Score = 46.4 bits (105), Expect = 7e-04
Identities = 26/62 (41%), Positives = 37/62 (59%)
Frame = -3
Query: 208 KATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRI 29
+ P SE++ K LARAG SRRE E++I AGR++V+GK+ + V V I +
Sbjct: 81 RGAPVEEETSERIAKRLARAGIASRREAETMIAAGRIAVNGKVLE-SPAVNVKRTDIITV 139
Query: 28 DG 23
DG
Sbjct: 140 DG 141
>UniRef50_Q0LMS3 Cluster: Pseudouridine synthase; n=2; Bacteria|Rep:
Pseudouridine synthase - Herpetosiphon aurantiacus ATCC
23779
Length = 728
Score = 46.4 bits (105), Expect = 7e-04
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Frame = -3
Query: 178 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLIS 11
E+L K LARAG SRR E ++ AGRVSV+G++ + LG +++ IR+DG I+
Sbjct: 2 ERLHKFLARAGVDSRRACEELMLAGRVSVNGRVQRELGTQIDPDKD-DIRVDGEQIT 57
>UniRef50_Q1GFA6 Cluster: Pseudouridine synthase; n=10;
Rhodobacteraceae|Rep: Pseudouridine synthase -
Silicibacter sp. (strain TM1040)
Length = 422
Score = 46.0 bits (104), Expect = 0.001
Identities = 27/70 (38%), Positives = 40/70 (57%)
Frame = -3
Query: 229 KAYQTPGKATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVT 50
K Q A + S +++ KVL+RAG SRRE E +I GRV+V+GK+ + VT
Sbjct: 45 KGLQAGAPADARPSQDGDRIAKVLSRAGVASRREAERMIAEGRVAVNGKVID-SPALNVT 103
Query: 49 PGLKIRIDGH 20
+I +DG+
Sbjct: 104 NLDRIVVDGN 113
>UniRef50_A6C4P7 Cluster: Pseudouridine synthase; n=1; Planctomyces
maris DSM 8797|Rep: Pseudouridine synthase -
Planctomyces maris DSM 8797
Length = 352
Score = 46.0 bits (104), Expect = 0.001
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVR 5
+LQK LA G GSRR E IE GRVSVDG I +LG +++ I +DG + ++
Sbjct: 24 RLQKFLAATGLGSRRHCEEYIETGRVSVDGDVITELGAKIDPETQF-IEVDGERVRLQ 80
>UniRef50_A3ZQL4 Cluster: Pseudouridine synthase; n=1;
Blastopirellula marina DSM 3645|Rep: Pseudouridine
synthase - Blastopirellula marina DSM 3645
Length = 517
Score = 46.0 bits (104), Expect = 0.001
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = -3
Query: 220 QTPGKATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPG 44
+ P ++ E+L KVLA AG SRR+ E++I+ GRV VDGK + +LG +V+
Sbjct: 3 ENPAESDNPAPLRLERLHKVLAFAGIDSRRKCEALIQEGRVEVDGKFVTELGMKVD-PEH 61
Query: 43 LKIRIDG 23
+I +DG
Sbjct: 62 QEILVDG 68
>UniRef50_P42395 Cluster: Ribosomal large subunit pseudouridine
synthase B; n=3; Buchnera aphidicola|Rep: Ribosomal
large subunit pseudouridine synthase B - Buchnera
aphidicola subsp. Schizaphis graminum
Length = 257
Score = 45.6 bits (103), Expect = 0.001
Identities = 25/61 (40%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Frame = -3
Query: 184 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRV-EVTPGLKIRIDGHLISV 8
M+ K+QK+L+ G+GSRR IE +I+ G++S++G+ A +G + + PG +I ID I V
Sbjct: 1 MTAKIQKILSDLGYGSRRFIECMIKCGKISINGEKAIIGQYLNKKNPG-EILIDKKKIIV 59
Query: 7 R 5
+
Sbjct: 60 K 60
>UniRef50_Q74DB4 Cluster: Pseudouridine synthase; n=5;
Desulfuromonadales|Rep: Pseudouridine synthase -
Geobacter sulfurreducens
Length = 247
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = -3
Query: 184 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISV 8
M E+LQK+L++AG SRRE E I GRV+V+G + +LG + + +I +DG +
Sbjct: 1 MEERLQKLLSQAGVASRREAERFITEGRVAVNGTVVTELGSKADPERD-RITVDGQPVRP 59
Query: 7 RE 2
E
Sbjct: 60 AE 61
>UniRef50_O32069 Cluster: YtzG protein; n=1; Bacillus subtilis|Rep:
YtzG protein - Bacillus subtilis
Length = 86
Score = 44.8 bits (101), Expect = 0.002
Identities = 17/34 (50%), Positives = 29/34 (85%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK 74
+L K+LA +G+GSR+E++++++AG V +DGK AK
Sbjct: 2 RLDKLLANSGYGSRKEVKAVVKAGAVMIDGKPAK 35
>UniRef50_Q3J464 Cluster: Pseudouridine synthase; n=2; Rhodobacter
sphaeroides|Rep: Pseudouridine synthase - Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 /
DSM158)
Length = 508
Score = 44.4 bits (100), Expect = 0.003
Identities = 24/63 (38%), Positives = 38/63 (60%)
Frame = -3
Query: 190 SSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLIS 11
S E++ KVL+RAG SRR+ E +IE GR++V+G+ + V P +I +DG ++
Sbjct: 4 SKDGERIAKVLSRAGIASRRDAERMIELGRIAVNGRTID-SPALNVGPKDRITVDGQPLA 62
Query: 10 VRE 2
E
Sbjct: 63 PPE 65
>UniRef50_Q6NAL9 Cluster: Pseudouridine synthase; n=34;
Alphaproteobacteria|Rep: Pseudouridine synthase -
Rhodopseudomonas palustris
Length = 731
Score = 44.0 bits (99), Expect = 0.004
Identities = 27/68 (39%), Positives = 38/68 (55%)
Frame = -3
Query: 205 ATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRID 26
A K E++ KV+ARAG SRR+ E+ I GRV+V+GK+ ++V I ID
Sbjct: 396 APAKSDKAGERIAKVVARAGLCSRRDAEAWITEGRVTVNGKVID-SPALDVKASDIITID 454
Query: 25 GHLISVRE 2
G + RE
Sbjct: 455 GKPLPERE 462
>UniRef50_A4ECD6 Cluster: Pseudouridine synthase; n=1; Collinsella
aerofaciens ATCC 25986|Rep: Pseudouridine synthase -
Collinsella aerofaciens ATCC 25986
Length = 321
Score = 44.0 bits (99), Expect = 0.004
Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDG 23
+LQ+ LARAG SRR E ++ AGRV+V+G +A +LG +V+V I +DG
Sbjct: 31 RLQRFLARAGVASRRGSEDLMTAGRVTVNGLVATELGTKVDVDRD-HIEVDG 81
>UniRef50_A6EPE0 Cluster: Pseudouridine synthase; n=1; unidentified
eubacterium SCB49|Rep: Pseudouridine synthase -
unidentified eubacterium SCB49
Length = 291
Score = 43.6 bits (98), Expect = 0.005
Identities = 21/57 (36%), Positives = 37/57 (64%)
Frame = -3
Query: 181 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLIS 11
S +L K ++ +G+ SRR+ + +IE G+V+++G LGDR P I ++G+LI+
Sbjct: 7 STRLNKAISDSGYCSRRQADKLIEEGKVTLNGNPVSLGDR--AMPDDVIHVEGNLIT 61
>UniRef50_P35159 Cluster: Ribosomal large subunit pseudouridine
synthase B; n=104; Firmicutes|Rep: Ribosomal large
subunit pseudouridine synthase B - Bacillus subtilis
Length = 229
Score = 43.6 bits (98), Expect = 0.005
Identities = 24/53 (45%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = -3
Query: 178 EKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDG 23
E+LQKV+A AG SR + E +I+ G+V V+GK + +LG V+VT +I ++G
Sbjct: 2 ERLQKVIAHAGVASRSKAEELIKEGKVKVNGKVVTELG--VKVTGSDQIEVNG 52
>UniRef50_Q7MVB7 Cluster: S4 domain protein; n=1; Porphyromonas
gingivalis|Rep: S4 domain protein - Porphyromonas
gingivalis (Bacteroides gingivalis)
Length = 150
Score = 43.2 bits (97), Expect = 0.007
Identities = 20/42 (47%), Positives = 29/42 (69%)
Frame = -3
Query: 184 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRV 59
M ++ K+++ AG GSRRE E I GRV ++G+IA+L D V
Sbjct: 1 MKLRINKLISDAGLGSRREAEKYITEGRVKINGRIARLTDLV 42
>UniRef50_A6VZH0 Cluster: Pseudouridine synthase; n=26;
Bacteria|Rep: Pseudouridine synthase - Marinomonas sp.
MWYL1
Length = 355
Score = 43.2 bits (97), Expect = 0.007
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = -3
Query: 190 SSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLIS 11
++ S +L K ++ +G SRR+ + IE G V ++GK A +GD +V G +R++G +I
Sbjct: 3 NASSTRLNKYISESGICSRRDADRFIEQGNVFINGKRASVGD--QVVAGDTVRVNGQIIE 60
Query: 10 VRE 2
++
Sbjct: 61 PQD 63
>UniRef50_Q73PC4 Cluster: Pseudouridine synthase; n=1; Treponema
denticola|Rep: Pseudouridine synthase - Treponema
denticola
Length = 234
Score = 42.7 bits (96), Expect = 0.009
Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLI 14
+LQ LAR G SRR E++I GRVSVDGK I +LG ++V+ KI +DG I
Sbjct: 6 RLQVYLARCGVASRRASENLILNGRVSVDGKIITELG--IKVSGKEKICLDGKQI 58
>UniRef50_Q1GU97 Cluster: Pseudouridine synthase; n=5;
Sphingomonadales|Rep: Pseudouridine synthase -
Sphingopyxis alaskensis (Sphingomonas alaskensis)
Length = 285
Score = 42.7 bits (96), Expect = 0.009
Identities = 16/33 (48%), Positives = 29/33 (87%)
Frame = -3
Query: 178 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKI 80
+++ K+LARAG GSRR++E +IE GR++++G++
Sbjct: 49 QRIAKLLARAGVGSRRDVERMIEEGRIALNGEV 81
>UniRef50_Q688C2 Cluster: Pseudouridine synthase; n=1; Mycoplasma
mobile|Rep: Pseudouridine synthase - Mycoplasma mobile
Length = 235
Score = 41.5 bits (93), Expect = 0.021
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 2
++QK++++AG SRR E +I RV ++G IAK+GD+ + I +D +IS E
Sbjct: 5 RIQKLISQAGISSRRAAEDLILKKRVKINGVIAKIGDKASLED--VILVDEKVISKEE 60
>UniRef50_Q97I05 Cluster: Pseudouridine synthase; n=20;
Bacteria|Rep: Pseudouridine synthase - Clostridium
acetobutylicum
Length = 236
Score = 41.1 bits (92), Expect = 0.028
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Frame = -3
Query: 184 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVE 56
M E+LQK +A G SRR+ E +I+ GRV V+G I +LG +V+
Sbjct: 1 MEERLQKYMAECGVASRRKCEKMIQDGRVKVNGTIVTELGFKVD 44
>UniRef50_Q04F57 Cluster: Pseudouridine synthase; n=2; Oenococcus
oeni|Rep: Pseudouridine synthase - Oenococcus oeni
(strain BAA-331 / PSU-1)
Length = 237
Score = 41.1 bits (92), Expect = 0.028
Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Frame = -3
Query: 178 EKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRV 59
E+LQK +A+AG SRR+ E +I G+V V+GK I KLG +V
Sbjct: 5 ERLQKRIAQAGVASRRKAEEMIVNGQVKVNGKIITKLGKKV 45
>UniRef50_A0L6G3 Cluster: RNA-binding S4 domain protein precursor;
n=1; Magnetococcus sp. MC-1|Rep: RNA-binding S4 domain
protein precursor - Magnetococcus sp. (strain MC-1)
Length = 332
Score = 41.1 bits (92), Expect = 0.028
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = -3
Query: 202 TPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRID 26
+P+ + +LQK LA G SRRE E I+ GRVS++G+ + +LG V+V ++ +D
Sbjct: 62 SPRVIGEAPRLQKWLAEQGLCSRREGEVWIQEGRVSINGEVVTELG--VKVAKRDRVAVD 119
Query: 25 GHLIS 11
G L++
Sbjct: 120 GQLVT 124
>UniRef50_P14589 Cluster: Uncharacterized protein 3' to Asp-rich and
His-rich proteins; n=1; Plasmodium falciparum (isolate
FCM17 / Senegal)|Rep: Uncharacterized protein 3' to
Asp-rich and His-rich proteins - Plasmodium falciparum
(isolate fcm17 / Senegal)
Length = 53
Score = 41.1 bits (92), Expect = 0.028
Identities = 24/45 (53%), Positives = 25/45 (55%)
Frame = -3
Query: 475 QYQFVGAKLFXXXXXXXXXXXXXXWLVIKLMLIETSFNHKDSVVC 341
QYQFVGAKLF WLVIKLMLIETSF +C
Sbjct: 2 QYQFVGAKLFRWWCWRRRGWRRRWWLVIKLMLIETSFALDCEALC 46
>UniRef50_Q9A788 Cluster: Pseudouridine synthase; n=21;
Proteobacteria|Rep: Pseudouridine synthase - Caulobacter
crescentus (Caulobacter vibrioides)
Length = 241
Score = 40.7 bits (91), Expect = 0.037
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRI 29
+L ++LA G+GSR+E+++++ G+V +DG I K G R+ V L R+
Sbjct: 3 RLDRLLANLGYGSRKEVQALVAGGKVVLDGAILKDAGARIAVDATLPERM 52
>UniRef50_Q6AQ24 Cluster: Related to ribosomal large subunit
pseudouridine synthase B; n=1; Desulfotalea
psychrophila|Rep: Related to ribosomal large subunit
pseudouridine synthase B - Desulfotalea psychrophila
Length = 229
Score = 40.7 bits (91), Expect = 0.037
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGL-KIRIDGHLISVRE 2
+LQK LA +G SRR+ E +I GRV+++G+ + LG ++TP + KI +DG L+ E
Sbjct: 101 RLQKFLAASGICSRRKAEQLILDGRVTLNGETVLILG--TKITPDIDKITVDGKLVKEEE 158
>UniRef50_A6ES27 Cluster: Pseudouridylate synthase; n=2;
Bacteroidetes|Rep: Pseudouridylate synthase -
unidentified eubacterium SCB49
Length = 289
Score = 40.7 bits (91), Expect = 0.037
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Frame = -3
Query: 229 KAYQTPGKAT--PKGSSMSE--KLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGD 65
KA QT K + K ++ E +L K ++ +G SRRE ++ IE G VSV+GKI ++G
Sbjct: 39 KAKQTASKGSGATKNTNKQEGIRLNKYISNSGICSRREADTYIETGLVSVNGKIVNEMGY 98
Query: 64 RVEVTPGLKIRIDGHLIS 11
+V++ +R DG I+
Sbjct: 99 KVKLED--DVRFDGRRIN 114
>UniRef50_A1RN24 Cluster: Pseudouridine synthase; n=11;
Shewanella|Rep: Pseudouridine synthase - Shewanella sp.
(strain W3-18-1)
Length = 242
Score = 40.7 bits (91), Expect = 0.037
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK 74
+L K LA+ G GSRRE +I AGR++++GKIAK
Sbjct: 2 RLAKYLAQCGIGSRREACRLINAGRITLNGKIAK 35
>UniRef50_UPI00006CCA31 Cluster: conserved hypothetical protein;
n=1; Tetrahymena thermophila SB210|Rep: conserved
hypothetical protein - Tetrahymena thermophila SB210
Length = 484
Score = 40.3 bits (90), Expect = 0.049
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = -3
Query: 178 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRI 29
E+L K L+R+G SRR+ E +I+ G + VDGK+A + VTP I I
Sbjct: 176 ERLSKYLSRSGVCSRRQAEKMIKDGLIKVDGKVAT--SNLPVTPKNNIEI 223
>UniRef50_Q5NQ05 Cluster: Pseudouridylate synthase; n=1; Zymomonas
mobilis|Rep: Pseudouridylate synthase - Zymomonas
mobilis
Length = 132
Score = 40.3 bits (90), Expect = 0.049
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = -3
Query: 229 KAYQTPGKATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDG 86
K P A +++ K+L+RAG SRR IE++IE GR+++DG
Sbjct: 81 KRASEPASARIPREHGEQRIAKLLSRAGIASRRMIEAMIEEGRIAIDG 128
>UniRef50_A5CSG9 Cluster: Pseudouridine synthase; n=3;
Actinobacteria (class)|Rep: Pseudouridine synthase -
Clavibacter michiganensis subsp. michiganensis (strain
NCPPB 382)
Length = 286
Score = 40.3 bits (90), Expect = 0.049
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = -3
Query: 232 TKAYQTPGKATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVE 56
T + P P +LQKV+A AG SRR E +I AGRV+V+G+ + + G R++
Sbjct: 2 TPSSDRPHAWNPDEPVQGVRLQKVMAAAGVASRRVCEDMIAAGRVTVNGEVVTEPGRRID 61
>UniRef50_A1IDN1 Cluster: Pseudouridine synthase; n=1; Candidatus
Desulfococcus oleovorans Hxd3|Rep: Pseudouridine
synthase - Candidatus Desulfococcus oleovorans Hxd3
Length = 241
Score = 39.9 bits (89), Expect = 0.064
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRE 2
+LQK L+ AG SRR E I GRV+V+G+ + +LG +V+ + DGH +++ E
Sbjct: 11 RLQKFLSGAGVCSRRRAEVYIAEGRVAVNGQVVTELGTKVDPESD-DVMFDGHRVTLAE 68
>UniRef50_Q8R5S6 Cluster: Pseudouridine synthase; n=14;
Clostridia|Rep: Pseudouridine synthase -
Thermoanaerobacter tengcongensis
Length = 236
Score = 39.5 bits (88), Expect = 0.085
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVE 56
+LQK LA G SRR+ E I GRV V+GK+ K LG +++
Sbjct: 3 RLQKYLAECGIASRRKCEEYILQGRVKVNGKVVKELGTKID 43
>UniRef50_A6PPE5 Cluster: Pseudouridine synthase; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Pseudouridine synthase -
Victivallis vadensis ATCC BAA-548
Length = 241
Score = 39.5 bits (88), Expect = 0.085
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = -3
Query: 178 EKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDG 23
E+L K+L+ AG SRR +I+AGRV+V+G+ + + G R V PG ++ DG
Sbjct: 7 ERLVKILSAAGIASRRGAGDLIKAGRVTVNGETVFEPGFR--VAPGDRVEYDG 57
>UniRef50_A1UU09 Cluster: RNA pseudouridine synthase; n=1;
Bartonella bacilliformis KC583|Rep: RNA pseudouridine
synthase - Bartonella bacilliformis (strain ATCC 35685 /
KC583)
Length = 499
Score = 39.5 bits (88), Expect = 0.085
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = -3
Query: 181 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRID 26
SE++ K LARAG SRR+ E +I AGR++V+G + + V P I +D
Sbjct: 44 SERIAKRLARAGIASRRDAEMMIIAGRIAVNGTVVTT-PVLNVIPSDHITVD 94
>UniRef50_A1S9T3 Cluster: Pseudouridine synthase; n=1; Shewanella
amazonensis SB2B|Rep: Pseudouridine synthase -
Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Length = 254
Score = 39.5 bits (88), Expect = 0.085
Identities = 21/43 (48%), Positives = 25/43 (58%)
Frame = -3
Query: 187 SMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRV 59
S +L K LA AG SRR +IE GRV +DG+ A DRV
Sbjct: 7 SKGTRLCKYLAEAGVASRRGASRLIETGRVCIDGQQASHSDRV 49
>UniRef50_Q6AR36 Cluster: Related to pseudouridine synthase; n=1;
Desulfotalea psychrophila|Rep: Related to pseudouridine
synthase - Desulfotalea psychrophila
Length = 230
Score = 39.1 bits (87), Expect = 0.11
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLI 14
+LQK L+ G+ SR + E +I ++ V+GK A LGD+V KI I+G L+
Sbjct: 2 RLQKFLSDIGYCSRGQAEDLIRKRKIMVNGKQATLGDKVRGNE--KIVIEGRLL 53
>UniRef50_Q67P81 Cluster: Pseudouridine synthase; n=3; Bacteria|Rep:
Pseudouridine synthase - Symbiobacterium thermophilum
Length = 251
Score = 39.1 bits (87), Expect = 0.11
Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGL-KIRIDG 23
+L ++L G GSR+E+ ++++AGRV+VDG+ + G V+ PG + +DG
Sbjct: 2 RLDRLLGHMGFGSRKELRALLKAGRVTVDGRPVTDPGTLVD--PGTSSVAVDG 52
>UniRef50_A7AB62 Cluster: Putative uncharacterized protein; n=1;
Parabacteroides merdae ATCC 43184|Rep: Putative
uncharacterized protein - Parabacteroides merdae ATCC
43184
Length = 204
Score = 39.1 bits (87), Expect = 0.11
Identities = 17/42 (40%), Positives = 29/42 (69%)
Frame = -3
Query: 184 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRV 59
M +L K+++ +G SRRE + IE GRV+V+G + ++G +V
Sbjct: 4 MEVRLNKLISDSGLCSRREADKFIEEGRVTVNGSLPQVGQKV 45
>UniRef50_A6LIW8 Cluster: Putative pseudouridine synthase family 1
protein; n=1; Parabacteroides distasonis ATCC 8503|Rep:
Putative pseudouridine synthase family 1 protein -
Parabacteroides distasonis (strain ATCC 8503 / DSM 20701
/ NCTC11152)
Length = 189
Score = 39.1 bits (87), Expect = 0.11
Identities = 22/61 (36%), Positives = 37/61 (60%)
Frame = -3
Query: 184 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 5
M +L K+++ AG SRRE ++ IE RV+V+GK +G + VT + +DG ++V
Sbjct: 1 MEIRLNKLISEAGVCSRREADNFIEMERVTVNGKQPHVGQK--VTAEDVVLVDGERLNVE 58
Query: 4 E 2
+
Sbjct: 59 K 59
>UniRef50_A1G013 Cluster: Pseudouridine synthase; n=2;
Proteobacteria|Rep: Pseudouridine synthase -
Stenotrophomonas maltophilia R551-3
Length = 268
Score = 39.1 bits (87), Expect = 0.11
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -3
Query: 229 KAYQTPGKATPKGSS-MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEV 53
+++ G+A P SS + L +VL++AG SR E I GRV V G+I + +
Sbjct: 13 RSHAPRGRANPNASSGVRHGLARVLSKAGVCSRSEAARWIAEGRVRVSGRIVRDPEFPIA 72
Query: 52 TPGLKIRIDG 23
+P I +DG
Sbjct: 73 SPAPPIEVDG 82
>UniRef50_Q01DI0 Cluster: Propable 16S pseudouridylate synthase;
n=2; Ostreococcus|Rep: Propable 16S pseudouridylate
synthase - Ostreococcus tauri
Length = 337
Score = 39.1 bits (87), Expect = 0.11
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Frame = -3
Query: 232 TKAYQTPGKATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVE 56
+ + + A P+G E++ K+LAR G SRRE E +I GRV V+G I + G + +
Sbjct: 69 SSGFTSASNAFPEGL---ERVSKILARRGACSRREAEQLIADGRVRVNGTVITEQGHKCD 125
Query: 55 V-TPGLKIRIDG 23
V + ++I DG
Sbjct: 126 VNSDRVEITSDG 137
>UniRef50_UPI00015B96EC Cluster: UPI00015B96EC related cluster; n=1;
unknown|Rep: UPI00015B96EC UniRef100 entry - unknown
Length = 336
Score = 38.7 bits (86), Expect = 0.15
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = -3
Query: 211 GKATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVE 56
G+ S L +VL++ G SRR E +IE+GRV VDG++ + G RV+
Sbjct: 30 GRFAAHSSPSPVSLPRVLSKFGFCSRRSAEVLIESGRVRVDGRVVRNAGVRVD 82
>UniRef50_O66829 Cluster: Uncharacterized RNA pseudouridine synthase
aq_554; n=1; Aquifex aeolicus|Rep: Uncharacterized RNA
pseudouridine synthase aq_554 - Aquifex aeolicus
Length = 238
Score = 38.7 bits (86), Expect = 0.15
Identities = 18/58 (31%), Positives = 34/58 (58%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 2
+L K L+++ H SR+E + +I GRV V GK+ K + V G ++ ++G + ++
Sbjct: 2 RLDKYLSKSLHISRKEAKELIREGRVKVSGKVVKQAE-YRVKEGEEVEVEGKSVKPKK 58
>UniRef50_O83472 Cluster: Putative uncharacterized protein; n=1;
Treponema pallidum|Rep: Putative uncharacterized protein
- Treponema pallidum
Length = 261
Score = 38.3 bits (85), Expect = 0.20
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISV 8
+LQ LAR+G SRR E++I +GRV+VDG+ R + + +DG ++ +
Sbjct: 11 RLQVYLARSGCASRRACEALIASGRVTVDGQTVTTQGRTVCAQNV-VCVDGTVVQL 65
>UniRef50_A6G735 Cluster: Pseudouridine synthase; n=1; Plesiocystis
pacifica SIR-1|Rep: Pseudouridine synthase -
Plesiocystis pacifica SIR-1
Length = 300
Score = 38.3 bits (85), Expect = 0.20
Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRV 59
+LQK +A AG SRR+ E +I AG V V+G++ + LG RV
Sbjct: 32 RLQKFMASAGVASRRKAEELITAGVVRVNGQVVRELGTRV 71
>UniRef50_A5IXL5 Cluster: Pseudouridine synthase; n=3;
Mycoplasma|Rep: Pseudouridine synthase - Mycoplasma
agalactiae
Length = 246
Score = 38.3 bits (85), Expect = 0.20
Identities = 18/56 (32%), Positives = 38/56 (67%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISV 8
++QK++A++G SRR+ E +I G V V+G + +GD+ + +I+++G +I++
Sbjct: 6 RVQKLIAQSGLMSRRDAEKMISKGLVFVNGIKSSIGDKASMND--EIKVNGKIINL 59
>UniRef50_A3HY40 Cluster: Pseudouridine synthase; n=1; Algoriphagus
sp. PR1|Rep: Pseudouridine synthase - Algoriphagus sp.
PR1
Length = 434
Score = 38.3 bits (85), Expect = 0.20
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = -3
Query: 208 KATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRV 59
KA KG +L K +A +G SRRE + +I G VSV+GK + +LG +V
Sbjct: 192 KAKGKGEDTLFRLNKYIANSGICSRREADDLIAKGLVSVNGKVVTELGLKV 242
>UniRef50_Q0F269 Cluster: Pseudouridine synthase; n=1; Mariprofundus
ferrooxydans PV-1|Rep: Pseudouridine synthase -
Mariprofundus ferrooxydans PV-1
Length = 289
Score = 37.9 bits (84), Expect = 0.26
Identities = 22/71 (30%), Positives = 37/71 (52%)
Frame = -3
Query: 214 PGKATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKI 35
P A E++ + LA G SRRE + I+AGRVS++G++ + V V G +
Sbjct: 31 PKYAAEPSPGNPERINRYLAHCGLCSRREADRWIQAGRVSINGQLIE-APGVIVKSGDTV 89
Query: 34 RIDGHLISVRE 2
+D L+ ++
Sbjct: 90 MVDDKLVEPQQ 100
>UniRef50_Q090H6 Cluster: Ribosomal large subunit pseudouridine
synthase B; n=4; Cystobacterineae|Rep: Ribosomal large
subunit pseudouridine synthase B - Stigmatella
aurantiaca DW4/3-1
Length = 270
Score = 37.9 bits (84), Expect = 0.26
Identities = 22/66 (33%), Positives = 36/66 (54%)
Frame = -3
Query: 220 QTPGKATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGL 41
+T A +G + + L + LARAG +E E I+ GRV+V+G++ + V G
Sbjct: 16 KTSRPARWEGKTKPDWLSRALARAGALPLQEAEDAIQEGRVTVNGRVVR-QPLAPVPEGA 74
Query: 40 KIRIDG 23
+R+DG
Sbjct: 75 VLRVDG 80
>UniRef50_A1K3P0 Cluster: Pseudouridylate synthase; n=3;
Betaproteobacteria|Rep: Pseudouridylate synthase -
Azoarcus sp. (strain BH72)
Length = 500
Score = 37.9 bits (84), Expect = 0.26
Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVE 56
+L KV+A G SRRE + +IE G V VDG ++++LG R++
Sbjct: 263 RLSKVMADRGICSRREADELIERGWVFVDGRRVSELGTRID 303
>UniRef50_A0M7H0 Cluster: Ribosomal large subunit pseudouridine
synthase F; n=4; Flavobacteriales|Rep: Ribosomal large
subunit pseudouridine synthase F - Gramella forsetii
(strain KT0803)
Length = 295
Score = 37.9 bits (84), Expect = 0.26
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = -3
Query: 202 TPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRID 26
+P +S +L K +A +G SRR+ + I AG V+V+GK I ++G RV++ +R D
Sbjct: 55 SPLTNSDGIRLNKYIANSGVCSRRDADMYIAAGNVTVNGKSITEMGYRVKLED--DVRFD 112
Query: 25 GHLIS 11
G ++
Sbjct: 113 GRRLN 117
>UniRef50_O67444 Cluster: Uncharacterized RNA pseudouridine synthase
aq_1464; n=2; Aquifex aeolicus|Rep: Uncharacterized RNA
pseudouridine synthase aq_1464 - Aquifex aeolicus
Length = 249
Score = 37.9 bits (84), Expect = 0.26
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Frame = -3
Query: 184 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKI-RIDG 23
M ++ K L+ AG SRR+ E +I GRV V+G++ + LG V+V P + I +DG
Sbjct: 2 MEVRINKFLSEAGVASRRKAEKLILEGRVKVNGEVVRSLG--VKVNPEVDIVEVDG 55
>UniRef50_Q8F3V8 Cluster: Pseudouridine synthase; n=4;
Leptospira|Rep: Pseudouridine synthase - Leptospira
interrogans
Length = 246
Score = 37.5 bits (83), Expect = 0.34
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVE 56
+L + LA G GSRR+ E +I+ G + ++GK + LG R++
Sbjct: 16 RLNRFLADCGLGSRRKTEELIQKGHIEINGKRVTNLGTRID 56
>UniRef50_Q26G32 Cluster: Ribosomal large subunit pseudouridine
synthase F; n=2; Flavobacteria|Rep: Ribosomal large
subunit pseudouridine synthase F - Flavobacteria
bacterium BBFL7
Length = 326
Score = 37.5 bits (83), Expect = 0.34
Identities = 20/55 (36%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLI 14
+L K ++ +G SRR+ + I+AG V+V+GK ++++G RV++T +++ DG I
Sbjct: 95 RLNKYISNSGICSRRDADIYIKAGSVTVNGKPVSEMGYRVKLTD--EVKFDGQNI 147
>UniRef50_A7CZ84 Cluster: RNA-binding S4 domain protein; n=1;
Opitutaceae bacterium TAV2|Rep: RNA-binding S4 domain
protein - Opitutaceae bacterium TAV2
Length = 277
Score = 37.5 bits (83), Expect = 0.34
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGL-KIRIDG 23
+LQK LA AG SRR E++I G V V+G+ A LG + +TP + KI + G
Sbjct: 8 RLQKFLADAGICSRRAAETLIADGEVWVNGQPATLGQK--ITPDVDKITVRG 57
>UniRef50_A0CY18 Cluster: Chromosome undetermined scaffold_30, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_30,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 337
Score = 37.5 bits (83), Expect = 0.34
Identities = 21/49 (42%), Positives = 30/49 (61%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRI 29
+L K LA+ SRRE E +IE+G + VDGK K+ + VT KI++
Sbjct: 37 RLSKYLAQTSVCSRREAEKMIESGMILVDGK--KVESNIPVTSENKIQV 83
>UniRef50_Q21MN5 Cluster: Pseudouridine synthase; n=3;
Alteromonadales|Rep: Pseudouridine synthase -
Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM
17024)
Length = 324
Score = 36.7 bits (81), Expect = 0.60
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVE 56
+L K ++ +GH SRRE + +I + RV ++G + +LG VE
Sbjct: 8 RLNKFISDSGHCSRREADKLIASDRVKINGLLPELGAVVE 47
>UniRef50_A5ZYR1 Cluster: Pseudouridine synthase; n=1; Ruminococcus
obeum ATCC 29174|Rep: Pseudouridine synthase -
Ruminococcus obeum ATCC 29174
Length = 315
Score = 36.7 bits (81), Expect = 0.60
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRV 59
++ K L+ AG SRRE + + +AGRV+V GK G+R+
Sbjct: 14 RINKYLSAAGVCSRREADQLTDAGRVTVAGKEIGTGERI 52
>UniRef50_Q68WJ1 Cluster: Uncharacterized RNA pseudouridine synthase
RT0532; n=9; Rickettsia|Rep: Uncharacterized RNA
pseudouridine synthase RT0532 - Rickettsia typhi
Length = 242
Score = 36.7 bits (81), Expect = 0.60
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLIS 11
+L K+++ AG SRR E +I G+V +DG I L V +I + G LI+
Sbjct: 3 RLAKIISNAGVCSRRNAEKLIVGGKVKIDG-ITILSPATNVDISNQIEVSGRLIN 56
>UniRef50_Q8A0Z9 Cluster: Pseudouridine synthase; n=9; cellular
organisms|Rep: Pseudouridine synthase - Bacteroides
thetaiotaomicron
Length = 496
Score = 36.3 bits (80), Expect = 0.79
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVE 56
+L K LA AG SRRE + I AG VSV+G+ + +LG +++
Sbjct: 262 RLNKFLANAGVCSRREADEFITAGVVSVNGEVVTELGTKIK 302
>UniRef50_Q6YQY5 Cluster: Pseudouridine synthase; n=3; Candidatus
Phytoplasma|Rep: Pseudouridine synthase - Onion yellows
phytoplasma
Length = 245
Score = 36.3 bits (80), Expect = 0.79
Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = -3
Query: 178 EKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRV 59
++LQKVLA A SRR+ E +I R+ V+GK I++LG +V
Sbjct: 2 QRLQKVLAYANVASRRKAEILILEKRIKVNGKIISELGTKV 42
>UniRef50_Q6LNM8 Cluster: Pseudouridine synthase; n=23;
Vibrionaceae|Rep: Pseudouridine synthase -
Photobacterium profundum (Photobacterium sp. (strain
SS9))
Length = 372
Score = 36.3 bits (80), Expect = 0.79
Identities = 17/58 (29%), Positives = 35/58 (60%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 2
+L K ++ G+ SRRE + +I+ GRV+++G ++G +V P ++ +D + +E
Sbjct: 20 RLNKFISDTGYCSRREADKLIDQGRVTINGTQPEMG--TKVMPDDEVLVDDKPLRAKE 75
>UniRef50_A7PI03 Cluster: Chromosome chr13 scaffold_17, whole genome
shotgun sequence; n=5; core eudicotyledons|Rep:
Chromosome chr13 scaffold_17, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 393
Score = 36.3 bits (80), Expect = 0.79
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = -3
Query: 178 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKI 80
++L KVLA AG SRR E +I GRV+V+G +
Sbjct: 143 QRLSKVLAAAGVASRRNSEELIFEGRVTVNGSV 175
>UniRef50_Q8TYA5 Cluster: Predicted RNA-binding protein containing
the S4 domain; n=1; Methanopyrus kandleri|Rep: Predicted
RNA-binding protein containing the S4 domain -
Methanopyrus kandleri
Length = 79
Score = 36.3 bits (80), Expect = 0.79
Identities = 18/46 (39%), Positives = 31/46 (67%)
Frame = -3
Query: 139 SRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 2
SRRE + ++E+GRV V+GK+ + + V+PG +I +DG + V +
Sbjct: 19 SRREAKRLVESGRVRVNGKLVRKPWWL-VSPGDEIEVDGVTVRVED 63
>UniRef50_Q9WYA2 Cluster: Pseudouridine synthase; n=3; Bacteria|Rep:
Pseudouridine synthase - Thermotoga maritima
Length = 239
Score = 35.9 bits (79), Expect = 1.0
Identities = 16/54 (29%), Positives = 34/54 (62%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLI 14
+L + L+ +G G+R+E++ +I+ GRV+V+G++ L V + +DG ++
Sbjct: 2 RLDRYLSNSGVGTRKEVKKLIKQGRVTVNGRVV-LDPGHPVLENDAVALDGEVV 54
>UniRef50_Q14P18 Cluster: Pseudouridine synthase; n=1; Spiroplasma
citri|Rep: Pseudouridine synthase - Spiroplasma citri
Length = 267
Score = 35.9 bits (79), Expect = 1.0
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = -3
Query: 178 EKLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRV 59
E+LQKV+A G+ SRR+ E +I GRV V+ + LG +V
Sbjct: 2 ERLQKVIAAKGYCSRRKAEELIIQGRVKVNNVVVTTLGTKV 42
>UniRef50_A5TWE7 Cluster: Pseudouridine synthase; n=3; Fusobacterium
nucleatum|Rep: Pseudouridine synthase - Fusobacterium
nucleatum subsp. polymorphum ATCC 10953
Length = 234
Score = 35.9 bits (79), Expect = 1.0
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLI 14
++ K L+ G SRR I+ IE GR++V+G A G +++ I IDG I
Sbjct: 2 RINKFLSTLGIASRRAIDKYIEEGRITVNGNTATTG--MDINENDNIFIDGKKI 53
>UniRef50_A1ZI67 Cluster: Pseudouridine synthase; n=1; Microscilla
marina ATCC 23134|Rep: Pseudouridine synthase -
Microscilla marina ATCC 23134
Length = 391
Score = 35.9 bits (79), Expect = 1.0
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLK 38
+L + ++ +G SRRE + +IE G +SV+GK I ++G +V T +K
Sbjct: 160 RLNRFISNSGVCSRREADKLIEMGMISVNGKVITEMGFQVSPTDTVK 206
>UniRef50_Q9A9V6 Cluster: RNA pseudouridylate synthase, putative;
n=3; Alphaproteobacteria|Rep: RNA pseudouridylate
synthase, putative - Caulobacter crescentus (Caulobacter
vibrioides)
Length = 255
Score = 35.5 bits (78), Expect = 1.4
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = -3
Query: 178 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPG 44
+++ K LA++G SRRE E +I G VS+DG++ + R ++ PG
Sbjct: 13 QRVNKWLAQSGVCSRREAEQLISDGLVSIDGEVVEDVGR-KIQPG 56
>UniRef50_Q2S2G3 Cluster: Pseudouridine synthase; n=1; Salinibacter
ruber DSM 13855|Rep: Pseudouridine synthase -
Salinibacter ruber (strain DSM 13855)
Length = 249
Score = 35.5 bits (78), Expect = 1.4
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -3
Query: 205 ATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRI 29
AT ++ K +A AG SRR+ + ++E GRV +DG ++ + G V G + +
Sbjct: 2 ATESSDREGMRINKYIAHAGVCSRRDADDLVEQGRVHIDGERVDQHGTCVR--EGQTVTV 59
Query: 28 DG 23
DG
Sbjct: 60 DG 61
>UniRef50_A6EJI4 Cluster: Pseudouridine synthase; n=1; Pedobacter
sp. BAL39|Rep: Pseudouridine synthase - Pedobacter sp.
BAL39
Length = 463
Score = 35.5 bits (78), Expect = 1.4
Identities = 18/55 (32%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLI 14
+L + +A +G SRR+ + +I AG VSV+G+ +++LG +++ ++R +G L+
Sbjct: 229 RLNRYIANSGICSRRKADELIAAGVVSVNGEVVSELGHKIDPAKD-QVRYNGELL 282
>UniRef50_A1VDC0 Cluster: Pseudouridine synthase; n=4;
Desulfovibrio|Rep: Pseudouridine synthase -
Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
Length = 292
Score = 35.5 bits (78), Expect = 1.4
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRE 2
+L K L+ AG SRR+ ++ I G+V V+G+ + ++G RV +I ++G L++ E
Sbjct: 47 RLNKALSGAGVCSRRQADTFIAGGKVRVNGEVVTEMGRRVFPATD-RIEVEGRLLACGE 104
>UniRef50_Q7NQJ1 Cluster: Pseudouridylate synthase; n=1;
Chromobacterium violaceum|Rep: Pseudouridylate synthase
- Chromobacterium violaceum
Length = 233
Score = 35.1 bits (77), Expect = 1.8
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -3
Query: 181 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRV 59
S +L K + G SRRE ++ IE G V VDGK+ LG RV
Sbjct: 5 SVRLSKRMVELGLCSRREADACIEQGLVKVDGKVVNTLGARV 46
>UniRef50_Q8R5V5 Cluster: Pseudouridine synthase; n=3;
Firmicutes|Rep: Pseudouridine synthase -
Thermoanaerobacter tengcongensis
Length = 240
Score = 34.7 bits (76), Expect = 2.4
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 2
+L K+L+ G G+R+E++ I+ G V V+G+I + T ++ DG + +E
Sbjct: 5 RLDKLLSNMGIGTRKEVKKYIKDGLVEVNGEIVLDPSKTVDTEKDEVLFDGEKVEYKE 62
>UniRef50_A6PUD8 Cluster: Cation-transporting ATPase; n=1;
Victivallis vadensis ATCC BAA-548|Rep:
Cation-transporting ATPase - Victivallis vadensis ATCC
BAA-548
Length = 648
Score = 34.7 bits (76), Expect = 2.4
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = -3
Query: 136 RREIESIIEAGRVSV--DGKIAKLGDRVEVTPGLKIRIDGHLISVR 5
R + +++E GR +V G++A +G R+ V PG ++ +DG L++ R
Sbjct: 142 RPRLATVVEGGRAAVVPAGEVA-IGSRIRVNPGERVPLDGKLLAER 186
>UniRef50_A3ESK0 Cluster: Pseudouridine synthase; n=2;
Leptospirillum|Rep: Pseudouridine synthase -
Leptospirillum sp. Group II UBA
Length = 616
Score = 34.7 bits (76), Expect = 2.4
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKL-GDRVEVTPGLKIRIDGHLISV 8
+LQK+LA G SRR E +I G V V+G + + G +V ++ +DG + V
Sbjct: 19 RLQKLLAHRGLASRRNAEEMIRGGLVKVNGIVVTVPGTKVHPETD-RVTVDGKTVPV 74
>UniRef50_Q9PE28 Cluster: Pseudouridine synthase; n=5; Xylella
fastidiosa|Rep: Pseudouridine synthase - Xylella
fastidiosa
Length = 236
Score = 34.3 bits (75), Expect = 3.2
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRV-SVDGKIAKLGDRVEVTPGLKIRIDG 23
KL K +A G+GSR+E+ I GR+ + +G++ D+V+ + +R DG
Sbjct: 2 KLLKYIANLGYGSRKEVARIFREGRITNGEGEVLYADDQVQ---HIAVRFDG 50
>UniRef50_A5KLG0 Cluster: Pseudouridine synthase; n=2;
Ruminococcus|Rep: Pseudouridine synthase - Ruminococcus
torques ATCC 27756
Length = 261
Score = 34.3 bits (75), Expect = 3.2
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = -3
Query: 184 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDR 62
M +L K L G G+R +++ I G VSV+G+IAK +R
Sbjct: 1 MKLRLDKYLTEMGCGTRSQVKKEILKGSVSVNGEIAKKAER 41
>UniRef50_Q8Y1L6 Cluster: Pseudouridine synthase; n=41;
Betaproteobacteria|Rep: Pseudouridine synthase -
Ralstonia solanacearum (Pseudomonas solanacearum)
Length = 252
Score = 33.9 bits (74), Expect = 4.2
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = -3
Query: 190 SSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDG 23
SS L ++L G G+RR + ++ AG V V+G A+ D T GL + +DG
Sbjct: 4 SSARLPLYRILQSQGFGTRRYCKDLVFAGLVHVNGVEAEDPDAQVDTAGLVLDVDG 59
>UniRef50_Q6F0R7 Cluster: 23S rRNA pseudouridine synthase; n=3;
Mollicutes|Rep: 23S rRNA pseudouridine synthase -
Mesoplasma florum (Acholeplasma florum)
Length = 251
Score = 33.9 bits (74), Expect = 4.2
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = -3
Query: 178 EKLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKI 35
E+LQK+++ G SRR E +I G+V V+G I +LG + +++
Sbjct: 2 ERLQKIISARGVTSRRNAEKLIVEGKVKVNGVVITELGFKTSTDADIEV 50
>UniRef50_Q21ST9 Cluster: RNA-binding S4; n=1; Rhodoferax
ferrireducens T118|Rep: RNA-binding S4 - Rhodoferax
ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
Length = 262
Score = 33.9 bits (74), Expect = 4.2
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = -3
Query: 208 KATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-----KLGD-RVEVTP 47
K P E+L K +A SRRE E IE G VSV+G++ ++ D RVEV P
Sbjct: 6 KPVPPAPREGERLAKRVAEMVPCSRREAEQYIEGGWVSVNGQVVEEPMFRVSDQRVEVDP 65
>UniRef50_A7HJ83 Cluster: RNA-binding S4 domain protein; n=1;
Fervidobacterium nodosum Rt17-B1|Rep: RNA-binding S4
domain protein - Fervidobacterium nodosum Rt17-B1
Length = 245
Score = 33.9 bits (74), Expect = 4.2
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = -3
Query: 208 KATPKGSSM-SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIR 32
K + K S + S +L K L+ A G+R E++ II+ GRVSV+ +I + D V I
Sbjct: 4 KISKKESEIKSIRLDKFLSNAHIGTRNEVKKIIKEGRVSVNFEIIRNPD-FHVKLDDIIE 62
Query: 31 IDGHLI 14
+DG+ I
Sbjct: 63 LDGNRI 68
>UniRef50_Q016A8 Cluster: Homology to unknown gene; n=2;
Ostreococcus|Rep: Homology to unknown gene -
Ostreococcus tauri
Length = 405
Score = 33.9 bits (74), Expect = 4.2
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = -3
Query: 223 YQTPGKATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDG 86
Y+TP A + E+L K LA G SRR + +I GRV V+G
Sbjct: 129 YKTPA-ARRRERDEGERLNKALASLGVASRRGADDLIFGGRVKVNG 173
>UniRef50_O51155 Cluster: Uncharacterized RNA pseudouridine synthase
BB_0129; n=3; Borrelia burgdorferi group|Rep:
Uncharacterized RNA pseudouridine synthase BB_0129 -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 249
Score = 33.9 bits (74), Expect = 4.2
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = -3
Query: 160 LARAGHGSRREIESIIEAGRVSVDGKIAKLGDRV 59
LA G GSRR E +I V V+ IAKLGD+V
Sbjct: 13 LAEKGVGSRRFCEELIRKKLVRVNNTIAKLGDKV 46
>UniRef50_Q8KF53 Cluster: Pseudouridine synthase; n=10;
Chlorobiaceae|Rep: Pseudouridine synthase - Chlorobium
tepidum
Length = 247
Score = 33.5 bits (73), Expect = 5.6
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRE 2
++ K LA G SRR + ++ G+VSV+G IA + G +V+ ++ +DG L++ E
Sbjct: 11 RINKYLAMCGVASRRAADQLVLEGKVSVNGHIADEPGFKVDPRND-EVIVDGRLMATPE 68
>UniRef50_Q8ZT37 Cluster: Molybdopterin-guanine dinucleotide
biosynthesis protein A; n=4; Pyrobaculum|Rep:
Molybdopterin-guanine dinucleotide biosynthesis protein
A - Pyrobaculum aerophilum
Length = 264
Score = 33.5 bits (73), Expect = 5.6
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 142 GSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRID 26
G RR I+ +IEAGR DG + G+ + PG +I D
Sbjct: 25 GGRRLIDYVIEAGREVADGVVIAAGNNASLYPGERILQD 63
>UniRef50_UPI00006A2770 Cluster: UPI00006A2770 related cluster; n=1;
Xenopus tropicalis|Rep: UPI00006A2770 UniRef100 entry -
Xenopus tropicalis
Length = 213
Score = 33.1 bits (72), Expect = 7.4
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -3
Query: 178 EKLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRI 29
E+L K LA SRRE E IE G V VDG ++ G R V PG +IR+
Sbjct: 6 ERLAKRLAAQLPCSRREAELYIEGGWVQVDGVEVEAPGAR--VAPGQQIRL 54
>UniRef50_Q470D4 Cluster: Pseudouridine synthase, Rsu; n=9;
Betaproteobacteria|Rep: Pseudouridine synthase, Rsu -
Ralstonia eutropha (strain JMP134) (Alcaligenes
eutrophus)
Length = 694
Score = 33.1 bits (72), Expect = 7.4
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKI 35
+L K ++ G SRRE + I G V VDGK + +LG RV ++I
Sbjct: 443 RLSKRMSELGLCSRREADEWIPRGWVIVDGKPVTELGSRVRADANIEI 490
>UniRef50_A6WK95 Cluster: Pseudouridine synthase; n=8;
Shewanella|Rep: Pseudouridine synthase - Shewanella
baltica OS185
Length = 256
Score = 33.1 bits (72), Expect = 7.4
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLI 14
+L + L H R+ + ++ +GRV VDG I K DR +V I++D H++
Sbjct: 28 RLDRYLCTQLHTHRKAVRELLLSGRVRVDGLIVKDMDR-QVDEFSHIQLDEHIL 80
>UniRef50_A5FR81 Cluster: Pseudouridine synthase; n=3;
Dehalococcoides|Rep: Pseudouridine synthase -
Dehalococcoides sp. BAV1
Length = 249
Score = 33.1 bits (72), Expect = 7.4
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = -3
Query: 190 SSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLI 14
SS L KVL A GSRR++ I+ G V+++G+ A+ + T K+ +G L+
Sbjct: 5 SSSDTSLVKVLVEARLGSRRKMAEAIKQGLVTLNGQKAESYSQPVNTQKDKVTFEGKLV 63
>UniRef50_Q5FKW8 Cluster: Pseudouridine synthase; n=3;
Lactobacillus|Rep: Pseudouridine synthase -
Lactobacillus acidophilus
Length = 236
Score = 32.7 bits (71), Expect = 9.7
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK 74
++ K LA GSR+E+ +I+ G V V+GK K
Sbjct: 2 RIDKYLANMNVGSRKEVHQLIKKGLVDVNGKTVK 35
>UniRef50_Q0AX41 Cluster: Pseudouridine synthase; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
Pseudouridine synthase - Syntrophomonas wolfei subsp.
wolfei (strain Goettingen)
Length = 239
Score = 32.7 bits (71), Expect = 9.7
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLI 14
+L K LA +G SRR+ E +I G+V V+ K I +L + PG ++ G +I
Sbjct: 2 RLAKYLAESGISSRRQAERLITQGKVKVNDKTITELA--FTLKPGDRVEFAGKII 54
>UniRef50_A5Z689 Cluster: Putative uncharacterized protein; n=1;
Eubacterium ventriosum ATCC 27560|Rep: Putative
uncharacterized protein - Eubacterium ventriosum ATCC
27560
Length = 251
Score = 32.7 bits (71), Expect = 9.7
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = -3
Query: 235 CTKAYQTPGKATP-----KGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKI 80
CT Y TP KG+ + +L ++A A SR I S IE+G+V V+GK+
Sbjct: 151 CTVKYMEAVNITPEFKIIKGTISNIRLDSLIATAFGTSRSSIISFIESGKVFVNGKM 207
>UniRef50_A5KLK6 Cluster: Putative uncharacterized protein; n=4;
Clostridiales|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 266
Score = 32.7 bits (71), Expect = 9.7
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -3
Query: 217 TPGKATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKI 80
TP G+ S +L +L+ A SR ++ +IE GRV V+GK+
Sbjct: 177 TPKYEELTGTVASVRLDSLLSLAFSSSRTKLSGLIEGGRVFVNGKL 222
>UniRef50_A2RKH7 Cluster: Pseudouridine synthase; n=5;
Streptococcaceae|Rep: Pseudouridine synthase -
Lactococcus lactis subsp. cremoris (strain MG1363)
Length = 257
Score = 32.7 bits (71), Expect = 9.7
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = -3
Query: 175 KLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDG 23
++ K LA AG SRR+ E +I AG+V+V+ + LG +V+ G + ++G
Sbjct: 20 RINKYLAHAGVASRRKAEELILAGKVTVNNVPMTNLG--YQVSTGDVVEVNG 69
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 627,649,409
Number of Sequences: 1657284
Number of extensions: 10627027
Number of successful extensions: 25914
Number of sequences better than 10.0: 156
Number of HSP's better than 10.0 without gapping: 25112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25898
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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