Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0707.Seq
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    29   0.92 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   2.8  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    26   6.5  
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   6.5  
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom...    25   8.6  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    25   8.6  

>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 226 AYQTPGKATPKGSSMSEKLQ-KVLARAGH 143
           +YQTP  A+P  SS+S  L    LA+ GH
Sbjct: 497 SYQTPNSASPPFSSLSHTLPISALAKIGH 525


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = +2

Query: 41  QSRGNFNTIAEFSNFAINTHTTGFNNRFDFTARTVAGTRQHFL 169
           QS   F   A FSN A   H   FNN      +    +  HFL
Sbjct: 797 QSSSLFRWSATFSNIADGIHRISFNNASTADGKDFTHSVDHFL 839


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 77  SNFAINTHTTGFNNRFDFTARTVAGTRQHF 166
           +N  +NT+ +  +  ++   R V GTR+HF
Sbjct: 4   NNERVNTNPSLISKSYNMKKRPVIGTRRHF 33


>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 156 ASTFCSFSLIELPFGVAFPGV*Y 224
           ASTF +  L+   FGV +PG+ Y
Sbjct: 49  ASTFSNSPLVPDNFGVVYPGIIY 71


>SPBC32F12.02 |rec14||recombination protein
           Rec14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 492 ASVMRINAVTGNLWSAN 542
           A +  +N V GNLWSA+
Sbjct: 17  ADIYSLNVVAGNLWSAS 33


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 2   LTYRNQVTIDTDF-QSRGNFNTIAEFSNFAINTHTTGFNNRFDF 130
           L Y ++   DT + +   +F++ + F+N A+N+ T G   + +F
Sbjct: 5   LQYADKYVFDTFYGKIAESFDSSSSFANTAVNSTTLGLAEKVNF 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,243
Number of Sequences: 5004
Number of extensions: 44174
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)