Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0707.Seq
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288...    35   0.078
06_03_0854 + 25400855-25403741,25406174-25407708                       29   3.9  
02_02_0280 - 8515894-8517309                                           29   5.1  
02_05_0424 + 28841562-28841569,28841636-28841714,28841826-288418...    28   9.0  
01_01_0997 + 7884974-7885043,7885689-7885975,7886056-7886311,788...    28   9.0  
01_01_0302 + 2473556-2473890,2475454-2475517,2475927-2476118           28   9.0  

>03_01_0371 +
           2883418-2883967,2884097-2884176,2886283-2886339,
           2887152-2887207,2888006-2888079,2889511-2889798,
           2890043-2890120,2890359-2890882,2891315-2891438,
           2891619-2891767,2891983-2892137,2892477-2892682,
           2892768-2892901,2892983-2893284,2893514-2893617,
           2893858-2893928
          Length = 983

 Score = 34.7 bits (76), Expect = 0.078
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = -3

Query: 178 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKI 80
           ++L KVLA AG  SRR  E +I  G+V+V+G +
Sbjct: 173 QRLAKVLAAAGVASRRTCEELIFQGKVTVNGSV 205


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 45  PGVTSTRSPSLAILPSTLTRPASIIDSISRREPWPARAS 161
           P   +  +P+L++ P  L  PASI  + +   P PA A+
Sbjct: 394 PASAAAHAPALSVEPDALVSPASIAPAYAAPAPAPAPAA 432


>02_02_0280 - 8515894-8517309
          Length = 471

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 283 QTDFTISESE*VLTHCC-TKAYQTPGKATPKGSSMSEKLQKVLARAGHGSRREIESIIEA 107
           QT  T S++   + H     A QT        ++M++K    +A+AGHG+        E+
Sbjct: 347 QTKDTTSDTTGGMAHKAGAMAAQTKDTVKDAAAAMAQKTSDTIAQAGHGAGEAKNRAAES 406

Query: 106 GRVS 95
           G+ S
Sbjct: 407 GKNS 410


>02_05_0424 +
           28841562-28841569,28841636-28841714,28841826-28841894,
           28841965-28842054,28842132-28842270,28842523-28842625,
           28842708-28842760,28842849-28842915,28843087-28843195,
           28843588-28843653,28843740-28843808,28843893-28843959,
           28844038-28844154,28844433-28844656,28845083-28845094
          Length = 423

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = -3

Query: 250 VLTHCCTKAYQTPGKATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKL 71
           V  H   + Y T   +T K  S +      L++ GH   R   S+ E GR ++  K++ L
Sbjct: 312 VSEHGMPRRYSTGTLSTTKPHSNASLKSSGLSKTGHPVLRHSRSLPETGRATMH-KVSTL 370

Query: 70  GDRV 59
            +R+
Sbjct: 371 TERL 374


>01_01_0997 +
           7884974-7885043,7885689-7885975,7886056-7886311,
           7886455-7886537,7886634-7886687,7887941-7888012,
           7889093-7889155,7889274-7889324,7889432-7889513,
           7889606-7889701,7889774-7889944,7890024-7890130,
           7890229-7890326,7890798-7891048,7891235-7891398,
           7891689-7891979,7892067-7892377,7892477-7892655,
           7893231-7893301
          Length = 918

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 217 TPGKATPKGSSMSEKLQKVLARAGHGS-RREIESIIEAGRVSVDGKIAKLGDRVEVTPGL 41
           T   AT KGS + + +Q  + +  HGS RR ++ + +A    +            +TP L
Sbjct: 807 TSSNATKKGSHLRKSIQSSIGKLIHGSERRNVQHLGQATPAKI-ANSTNNDVPSSITPDL 865

Query: 40  KIR 32
           ++R
Sbjct: 866 RLR 868


>01_01_0302 + 2473556-2473890,2475454-2475517,2475927-2476118
          Length = 196

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 142 RGRHAPALSVAFRS*SFLLVSPSQASDMLLCNSESELTL 258
           RGRHA    + + S + LLV+       LLC +E ++ L
Sbjct: 82  RGRHAVGKKIMYASIAPLLVAAGLTGAALLCENEYQVML 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,957,602
Number of Sequences: 37544
Number of extensions: 292376
Number of successful extensions: 636
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)