Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0707.Seq
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41830| Best HMM Match : S4 (HMM E-Value=1.6e-12)                    47   2e-05
SB_41690| Best HMM Match : DSL (HMM E-Value=0)                         31   0.74 
SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)                   31   0.74 
SB_48194| Best HMM Match : Dysbindin (HMM E-Value=3.1)                 29   3.0  
SB_17034| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_37510| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)                 28   6.9  
SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)                28   9.1  

>SB_41830| Best HMM Match : S4 (HMM E-Value=1.6e-12)
          Length = 275

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
 Frame = -3

Query: 229 KAYQTPGKATPKGSSMSE-KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVE 56
           KAY  P  +T K S     +L K +A +G  SRRE ++ I +G V V+GK I ++G +V+
Sbjct: 25  KAYSKPQSSTKKSSPEDGIRLNKYIANSGVCSRREADTYIASGNVVVNGKVITEMGFKVK 84

Query: 55  VTPGLKIRIDGHLISVRE 2
            T    IR DG  IS  E
Sbjct: 85  PTD--DIRFDGTAISPEE 100


>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
          Length = 2798

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 51   VTSTRSPSLAILPSTLTRPASIIDSISRREP-WPARA 158
            +T T S SL++LP T T  AS     S +EP WPARA
Sbjct: 2494 ITPTPSMSLSVLPLTSTVSASPSRPGSVKEPGWPARA 2530


>SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)
          Length = 681

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 51  VTSTRSPSLAILPSTLTRPASIIDSISRREP-WPARA 158
           +T T S SL++LP T T  AS     S +EP WPARA
Sbjct: 485 ITPTPSMSLSVLPLTSTVSASPSRPGSVKEPGWPARA 521


>SB_48194| Best HMM Match : Dysbindin (HMM E-Value=3.1)
          Length = 314

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 500 NENKRRYGQSLERESPKKAKGNA*XPFPXQICRYSXT 610
           N  + R G   ER+S  KA  +    FP  IC+Y  T
Sbjct: 197 NNRQNRQGSVEERDSLSKANKSTIPTFPSPICQYDIT 233


>SB_17034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 538 RIAEESEGQCVXXIPXPNLPI*XNLXTRNPVSVFPPXRRXSSVCXXLLYRAKNKF 702
           R ++  E  C+   P  +LP+     T++PV V PP R  S  C  L +   ++F
Sbjct: 77  RNSQSGESPCIS--PFASLPLVS--MTQSPVMVLPPIRTSSESCHELPHSLPSRF 127


>SB_37510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +2

Query: 14  NQVTIDTDFQSRGNFNTIAEFSNFAINTHTTGFNNRFDFTARTVAGTRQ 160
           N  TI+    SR N  TI+  SN   N +TT +N   +FT RT   T +
Sbjct: 89  NNYTINNKNNSRNNNYTIST-SN---NNYTTNYNKSKNFTTRTKTTTSE 133


>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
          Length = 1155

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 24  PSIRIFNPGVTSTRSPSLAILPSTLTRPASIIDSISRREPWPARAS 161
           PS +I  PG T+ R P + +  ST   P   ++  S RE  P R S
Sbjct: 245 PSHKI-KPGPTTPRQPPMPLASSTKDVPNLPLNMTSHRETTPPRPS 289


>SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)
          Length = 480

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
 Frame = -3

Query: 331 KPGR*TSSRLLKA*RVQTDFTISESE*VLTHCCTKAYQTPGKATPKGSSMSEKLQKVLAR 152
           KPGR  + R  +   ++T   ++     +T   ++  + PG+ T K   ++ K  +V  +
Sbjct: 61  KPGRLVTRRTSRV-TLKTS-RVTRKPGRVTRRTSRVTRKPGRVTRKPGRVTLKTSQVTRK 118

Query: 151 AGHGSRREIESIIEAGRVSV-DGKIAKLGDRVEVTPGLKIRIDGHL 17
            G  +R+      + GRV++   ++ +   RV   PG   R  G +
Sbjct: 119 PGRVTRKPGRVTRKPGRVTLKTSRVTRKPGRVTRKPGRVTRKPGRV 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,481,539
Number of Sequences: 59808
Number of extensions: 352876
Number of successful extensions: 686
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)