Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0707.Seq
         (741 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT010056-1|AAQ22525.1| 1417|Drosophila melanogaster LD18032p pro...    30   3.8  
AE014134-3263|AAF53910.3| 1621|Drosophila melanogaster CG31678-P...    30   3.8  

>BT010056-1|AAQ22525.1| 1417|Drosophila melanogaster LD18032p protein.
          Length = 1417

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 229  KAY-QTPGKATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSV 92
            K+Y QTP ++TPK    SE+   +L   G  + +E++      ++SV
Sbjct: 1056 KSYEQTPNQSTPKQRRPSEEAMLILKECGDSNMQELDPPSRQRKISV 1102


>AE014134-3263|AAF53910.3| 1621|Drosophila melanogaster CG31678-PA
            protein.
          Length = 1621

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 229  KAY-QTPGKATPKGSSMSEKLQKVLARAGHGSRREIESIIEAGRVSV 92
            K+Y QTP ++TPK    SE+   +L   G  + +E++      ++SV
Sbjct: 1260 KSYEQTPNQSTPKQRRPSEEAMLILKECGDSNMQELDPPSRQRKISV 1306


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,241,152
Number of Sequences: 53049
Number of extensions: 504117
Number of successful extensions: 991
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3355404063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)