Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0707.Seq
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AC024821-2|AAP86610.1|  588|Caenorhabditis elegans Hypothetical ...    28   8.0  

>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical
           protein T04F3.1 protein.
          Length = 3517

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 139 NRGRHAPALSVAFRS*SFLLVSPSQ 213
           NR RH P+ SVA    SF+  SPSQ
Sbjct: 810 NRRRHPPSASVAHSQSSFVDESPSQ 834


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical
           protein T04F3.1 protein.
          Length = 3517

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 139 NRGRHAPALSVAFRS*SFLLVSPSQ 213
           NR RH P+ SVA    SF+  SPSQ
Sbjct: 810 NRRRHPPSASVAHSQSSFVDESPSQ 834


>AC024821-2|AAP86610.1|  588|Caenorhabditis elegans Hypothetical
           protein Y55B1AR.2b protein.
          Length = 588

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 42  NPGVTSTRSPSLAILPSTLTRPASIIDSISRR 137
           NP +  +  P + I P T +RPAS+  SI  R
Sbjct: 440 NPTLQKSSPPVVTINPLTPSRPASVASSIGAR 471


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,138,355
Number of Sequences: 27780
Number of extensions: 249643
Number of successful extensions: 529
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)