Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0707.Seq
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39140.1 68415.m04809 pseudouridine synthase family protein         33   0.20 
At2g15300.1 68415.m01745 leucine-rich repeat transmembrane prote...    31   0.80 
At1g63440.1 68414.m07174 copper-exporting ATPase, putative / res...    31   0.80 
At3g25470.1 68416.m03166 bacterial hemolysin-related similar to ...    29   3.2  
At5g18700.1 68418.m02219 protein kinase-related contains protein...    29   4.3  
At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu...    29   4.3  
At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger) fa...    27   9.9  

>At2g39140.1 68415.m04809 pseudouridine synthase family protein 
          Length = 410

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = -3

Query: 178 EKLQKVLARAGHGSRREIESIIEAGRVSVDG 86
           ++L KVLA AG  SRR  E +I  G+V+V+G
Sbjct: 160 QRLSKVLAAAGVASRRTSEELIFDGKVTVNG 190


>At2g15300.1 68415.m01745 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 744

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 18/72 (25%), Positives = 36/72 (50%)
 Frame = +3

Query: 24  PSIRIFNPGVTSTRSPSLAILPSTLTRPASIIDSISRREPWPARASTFCSFSLIELPFGV 203
           PS     P ++ T SP++A++P+T T   S  +S ++      + ST    +L ++  G+
Sbjct: 289 PSTLSDPPNISETTSPAIAVMPTTPTPTNSSTESTNQTAKSKLKPSTIIGITLADIA-GL 347

Query: 204 AFPGV*YAFVQQ 239
           A   +   ++ Q
Sbjct: 348 AIIAMFILYIYQ 359


>At1g63440.1 68414.m07174 copper-exporting ATPase, putative /
           responsive-to-antagonist 1, putative /
           copper-transporting ATPase, putative similar to ATP
           dependent copper transporter SP|Q9S7J8 [Arabidopsis
           thaliana]
          Length = 995

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 106 GRVSVDGKIAKLGDRVEVTPGLKIRIDGHLI 14
           G   +DG++ +  D +++ PG K+  DG++I
Sbjct: 458 GEEEIDGRLIQKNDVIKIVPGAKVASDGYVI 488


>At3g25470.1 68416.m03166 bacterial hemolysin-related similar to
           hemolysine GB:AAD36643 from [Thermotoga maritima],
           contains Pfam profile: PF01479 S4 domain
          Length = 301

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -3

Query: 196 KGSSMSEKLQKV-LARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKI 35
           +G +  ++L +  + R    SR  I+S I  G+V VDG ++ K G  V  T  +KI
Sbjct: 49  RGKNKKQRLDEACVERFNEYSRTLIQSWIMQGKVLVDGRRVIKAGMPVSTTAAIKI 104


>At5g18700.1 68418.m02219 protein kinase-related contains protein
           kinase domain, INTERPRO:IPR000719
          Length = 1366

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 232 TKAYQTPGKATPKGSSMSEKLQKVLARAGHGSR 134
           +K ++TP K TP GS    KL        HG R
Sbjct: 314 SKGHETPIKGTPGGSKAQAKLPSRATEEKHGGR 346


>At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate
           mutase family protein similar to X4 protein GI:21386798,
           Y4 protein GI:21386800 from  [Silene dioica]; contains
           Pfam profiles PF00300: phosphoglycerate mutase family,
           PF01535: PPR repeat
          Length = 1053

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 251 SSDSLLHKSISDAWEGDTKRKLYERKATESAGACRPRFS 135
           SSD+++  S+ D WEG  + ++Y  +       C+P F+
Sbjct: 191 SSDAVIEMSLGD-WEGCNQAEIYSPETLSLIERCQPDFT 228


>At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger)
           family protein contains a Prosite:PS00518 Zinc finger,
           C3HC4 type (RING finger), signature and Pfam domain
           PF01485: IBR domain
          Length = 655

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 6   RTEIR*PSIRIFNPGVTSTRSPSLAILPSTLTRPASIIDSISRR 137
           RT+ R P+I + N   TST   +   LP    RPA ++   S R
Sbjct: 88  RTDERNPNIGLGNSRSTSTGHGNTKPLPQETVRPAQLVGEGSSR 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,427,663
Number of Sequences: 28952
Number of extensions: 233304
Number of successful extensions: 472
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)