Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0706.Seq
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    28   1.6  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    27   4.8  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   4.8  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   8.3  

>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +1

Query: 676 NVDFQTSXGEKPVYQGDGPTYVNHHPNQVFGVK--VPXST*IRNPKGSPPIXKL 831
           + D  T     P + GD P Y N  P ++ G K  +P    + NPK  P I K+
Sbjct: 78  STDEHTQKDRLPRWIGDNPYYKNRPPQKMRGNKPLLPVKESV-NPKNLPSISKV 130


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 691 FGSPRSLIVDSCSKLEQHSTLSRSILLI 608
           F SP +L   +CS L  HST    + L+
Sbjct: 26  FLSPNNLTEQTCSPLRAHSTFKEPVFLL 53


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +3

Query: 318 PIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIALPN 482
           P  P+ S ++ H   +    +    +L N I+L      ++PLSP    A+ P+PI L +
Sbjct: 172 PRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRLYS 231

Query: 483 SCA 491
           S A
Sbjct: 232 SDA 234


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 500 PFXCATVGKGDRCGPLRYYASWRKGDV 420
           P  C  V  G R GP   Y +W+  DV
Sbjct: 392 PKVCLFVRNGARLGPTSIYHAWKAFDV 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,374
Number of Sequences: 5004
Number of extensions: 57992
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)