Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0706.Seq
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.2  
04_04_0004 - 22089250-22089582,22090050-22090325,22090626-220912...    29   6.6  
11_06_0180 + 20962420-20962528,20962618-20962699,20962831-209629...    28   8.7  
11_06_0155 - 20712601-20713553,20713618-20714000,20714240-207142...    28   8.7  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 342 ITIHWPSFYNVV-TGKTLALPNLIALQH 422
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>04_04_0004 -
           22089250-22089582,22090050-22090325,22090626-22091282,
           22091367-22091603
          Length = 500

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 19  DSDDMSSFICLAADSNGS*PSSSLELVMSRASLACRALTPASPDELVREPRDVL 180
           D D   +   ++A S GS  ++     ++ ASLA RA  P     L+   RDV+
Sbjct: 166 DMDTPRAVYSVSASSPGSDVAAETAAALAAASLALRAADPGYSRRLLAAARDVM 219


>11_06_0180 +
           20962420-20962528,20962618-20962699,20962831-20962948,
           20963024-20963062,20963181-20963343,20963706-20963921,
           20964039-20964116,20964244-20964500,20964544-20964575,
           20964815-20965197,20965262-20965831,20966250-20966343,
           20966365-20966541,20966761-20966963,20968244-20968301,
           20969126-20969381,20969553-20969789
          Length = 1023

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 113 LARDITSSRLDDGYDPFESAARQMKELMSSESN--IPK 6
           L  D  SSR D G +  E+ +   KE +SSE N  +PK
Sbjct: 639 LTTDSRSSRKDPGNEQTENLSEAQKESLSSEKNSSLPK 676


>11_06_0155 -
           20712601-20713553,20713618-20714000,20714240-20714271,
           20714315-20714571,20714699-20714724,20714894-20715081,
           20715302-20715595,20715714-20715752,20715827-20715944,
           20716076-20716157,20716610-20716668,20717156-20717221,
           20717358-20717447,20718142-20718236
          Length = 893

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 113 LARDITSSRLDDGYDPFESAARQMKELMSSESN--IPK 6
           L  D  SSR D G +  E+ +   KE +SSE N  +PK
Sbjct: 723 LTTDSRSSRKDPGNEQTENLSEAQKESLSSEKNSSLPK 760


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,801,122
Number of Sequences: 37544
Number of extensions: 438122
Number of successful extensions: 1028
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)