Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0706.Seq
         (894 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51440.1 68414.m05790 lipase class 3 family protein similar t...    30   2.4  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    29   3.1  
At5g26770.2 68418.m03191 expressed protein                             28   7.3  
At5g26770.1 68418.m03190 expressed protein                             28   7.3  
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica...    28   7.3  
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    28   9.6  

>At1g51440.1 68414.m05790 lipase class 3 family protein similar to
           DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
           GI:16215706, lipase [Dianthus caryophyllus] GI:4103627;
           contains Pfam profile PF01764: Lipase
          Length = 527

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +1

Query: 640 VVPVWNKSP---LLKNVDFQTSXGEKPVYQGDGPTYVNHHPNQVFG 768
           V P W +     ++KN D Q    ++P+ +  GP  + HH  QV G
Sbjct: 470 VPPCWRQDENKGMVKNGDGQWVLPDRPLLEPHGPEDIAHHLQQVLG 515


>At1g03080.1 68414.m00282 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1744

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 609  IKRIDRDRVECCSSLEQESTIKERGLPNVKXRKTXL 716
            ++ +  + VE C +LE  ST+K+R +  +K R   L
Sbjct: 1340 LEGLTNELVEACKNLESRSTLKDREIEQLKGRVNNL 1375


>At5g26770.2 68418.m03191 expressed protein
          Length = 335

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = -1

Query: 303 LEESLRRLRVTAATMVR*IKSL*VGVQQRLPRRRGASRAG---DQDVARLADQLVGRRRR 133
           LE  L R R     + + +  L   +Q+   + R   RAG   D+ +  L+DQ+ G++  
Sbjct: 243 LESQLERQRRADQELKKKVLKLEFCLQEARSQTRKLQRAGERRDKAIKELSDQITGKQLN 302

Query: 132 KGAAGE 115
           +  +GE
Sbjct: 303 ESVSGE 308


>At5g26770.1 68418.m03190 expressed protein
          Length = 335

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = -1

Query: 303 LEESLRRLRVTAATMVR*IKSL*VGVQQRLPRRRGASRAG---DQDVARLADQLVGRRRR 133
           LE  L R R     + + +  L   +Q+   + R   RAG   D+ +  L+DQ+ G++  
Sbjct: 243 LESQLERQRRADQELKKKVLKLEFCLQEARSQTRKLQRAGERRDKAIKELSDQITGKQLN 302

Query: 132 KGAAGE 115
           +  +GE
Sbjct: 303 ESVSGE 308


>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|Q03468 Excision
           repair protein ERCC-6 (Cockayne syndrome protein CSB)
           {Homo sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1187

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +3

Query: 327 PIVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCAXEWRM 506
           PI +++T  W  F  V  GK   LP   A   +P++  G     P  ++    CA   R 
Sbjct: 576 PIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCAVVLRD 635

Query: 507 AIV 515
            I+
Sbjct: 636 LIM 638


>At5g24280.1 68418.m02856 expressed protein ; expression supported
           by MPSS
          Length = 1634

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 670 IVDSCSKLEQHSTLSRSILLIYKGFC-PISA 581
           I+D  SKLE  S+LS  I +I  G C P+ A
Sbjct: 691 IIDGISKLEVQSSLSLPITIIDSGKCLPVDA 721


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,824,380
Number of Sequences: 28952
Number of extensions: 325571
Number of successful extensions: 676
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)