Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0704.Seq
         (919 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.2  
02_04_0290 - 21627733-21628353,21628424-21628663,21628874-216292...    30   3.0  
05_05_0322 + 24094831-24094992,24095147-24095216,24096184-240963...    28   9.0  
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700...    28   9.0  
01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711...    28   9.0  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 342 ITIHWPSFYNVV-TGKTLALPNLIALQH 422
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>02_04_0290 -
           21627733-21628353,21628424-21628663,21628874-21629214,
           21630934-21631612,21631893-21631962,21632063-21632190
          Length = 692

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 24/92 (26%), Positives = 37/92 (40%)
 Frame = +3

Query: 270 ITADACTDSAARGARYPIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVI 449
           ++ DAC   AA+  R P+R +V  +        N +   + AL +  +      +PA   
Sbjct: 508 LSFDACMH-AAQNERLPLRVVVQVLFTEQVKISNALASSSAALRSSSSAPGADAAPAMPT 566

Query: 450 AKRPAPIALPNSCAAEWRMAIVSVNILLKFAL 545
            +R      P S    W  A   +N  LKF L
Sbjct: 567 TRRQLLDGTPQSFQEGWAAAKKDIN-TLKFEL 597


>05_05_0322 +
           24094831-24094992,24095147-24095216,24096184-24096307,
           24096403-24096502,24096598-24096825,24096916-24097041,
           24097092-24097376,24097490-24097648,24097751-24097929,
           24098078-24098210
          Length = 521

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 226 LERRLTDDMLANVSVSPRMRA 288
           LERR TD M + V V+P+MRA
Sbjct: 283 LERRPTDYMSSQVEVNPKMRA 303


>03_03_0090 +
           14367033-14367279,14367402-14368205,14368314-14370039,
           14370135-14370219,14370398-14370457,14370744-14370836
          Length = 1004

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = +2

Query: 8   PNSAEPPFN-----HYLGVLKTNKIXPRSYSIIPCTKYS 109
           P+S+EP        H L +LK  KI P   +I  C +YS
Sbjct: 807 PSSSEPEVTIRNILHALHILKAEKIFPTESNIADCIRYS 845


>01_06_1061 -
           34169469-34169624,34170837-34170938,34171029-34171180,
           34172087-34172153,34172239-34172419,34172655-34172778,
           34174775-34174871,34175929-34176331,34176729-34176888,
           34177412-34177486,34177714-34177892,34178224-34178303,
           34178561-34179322
          Length = 845

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -2

Query: 495 QLRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTPGFS----QSRRCKTTASEL 346
           QLR+CW G  +     LR    G      ++  TPG S    ++RRC+  +S++
Sbjct: 503 QLRDCWNGELLHGGKFLR----GRRVETDMAPATPGGSSQLVENRRCQLPSSQI 552


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,288,199
Number of Sequences: 37544
Number of extensions: 556402
Number of successful extensions: 1198
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)