Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0704.Seq
         (919 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica...    29   5.7  
At1g70620.2 68414.m08137 cyclin-related contains weak similarity...    28   7.5  
At1g70620.1 68414.m08138 cyclin-related contains weak similarity...    28   7.5  

>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|Q03468 Excision
           repair protein ERCC-6 (Cockayne syndrome protein CSB)
           {Homo sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1187

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +3

Query: 327 PIVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCAAEWRM 506
           PI +++T  W  F  V  GK   LP   A   +P++  G     P  ++    CA   R 
Sbjct: 576 PIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCAVVLRD 635

Query: 507 AIV 515
            I+
Sbjct: 636 LIM 638


>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 884

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 877 SXPFLXQFARFPPXNXKXXGPPFRF 803
           S   +  + RFPP N +  GPP+ F
Sbjct: 350 SGHIMPPYGRFPPPNPQPVGPPYAF 374


>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 897

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 877 SXPFLXQFARFPPXNXKXXGPPFRF 803
           S   +  + RFPP N +  GPP+ F
Sbjct: 337 SGHIMPPYGRFPPPNPQPVGPPYAF 361


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,591,864
Number of Sequences: 28952
Number of extensions: 420195
Number of successful extensions: 731
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)