Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0703.Seq
         (577 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   4.3  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   5.7  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    21   9.9  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   9.9  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 349 PFVWQLNSPSARP 311
           P  WQ NSP + P
Sbjct: 63  PLAWQANSPPSPP 75


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = +3

Query: 225 DRHETHERRANKKTSNTKH 281
           D+H+ HER       N  H
Sbjct: 87  DKHDRHERHFESSFGNNLH 105


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 257 VCSAFMSFVTIFLECPXGSK 198
           +C A  S++ I L+   GSK
Sbjct: 273 ICGAASSYLFIMLQLDIGSK 292


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 393 EHPPEHSSGXRNSVLLSFGNSIVLLLDHSCLLISNPSS 280
           +H  ++ S    S +++  + + L  DH  +L  NP S
Sbjct: 316 QHHQQNMSHEELSAMVNRCHPLSLSSDHQAMLHHNPMS 353


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,805
Number of Sequences: 336
Number of extensions: 2126
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)