Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0703.Seq
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    27   1.5  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    25   6.0  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    25   6.0  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.9  

>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 100 EYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPXGHS 219
           +YD++N DH  H    H     +  EA+         GHS
Sbjct: 21  DYDHHNHDHHGHDHHSHDSSSNSSSEAA-RLQFIQEHGHS 59


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -2

Query: 342 FGNSIVLLLDHSCLLISNPSSVWCLKSSCLLGVHEFRDDLSRMPXRIEV 196
           F  +  + L H CLL+  P   W L +     + + R+ ++ +P  I +
Sbjct: 251 FNLATFITLLHHCLLVLTPFQKWALSAPRTNILAQNREGIASLPGYIAI 299


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 267 KSSCLLGVHEFRDDLSRMPXRIEVVGVFRRF 175
           + +CL  +H+F  D+  +    E+V V RRF
Sbjct: 127 QDNCLWRLHKFPPDIYHLSVSAELVQVGRRF 157


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = +1

Query: 139 FTGHGGKQRTKKEASEHTNHFDPXGHSRKIVTKLMNA 249
           ++GH         ++   NHF+  GH    +T  +N+
Sbjct: 242 YSGHNSPHTNYSASTPSFNHFNAAGHPTGNITPTLNS 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,033
Number of Sequences: 5004
Number of extensions: 34901
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)