Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0703.Seq
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0254 - 23951495-23951902,23952000-23952155,23952344-239524...    31   0.50 
04_04_0256 + 23974297-23974387,23974824-23974942,23975619-239764...    29   3.5  
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191...    28   6.1  
12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110     27   8.1  
10_06_0172 + 11473892-11474896                                         27   8.1  

>04_04_0254 -
           23951495-23951902,23952000-23952155,23952344-23952485,
           23952772-23953160,23953833-23953948,23954290-23954371
          Length = 430

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 390 HPPEHSSGXRNSVLLSFGNSIVLLLDHSCLLISNPSSVWCLKSSCLLG 247
           H PEH  G   SV ++  +S   L++ +C +++N  S+ CL    + G
Sbjct: 313 HIPEHHHGHLKSVKITGFSSAKSLVELTCYILNNAVSLECLTLDTIYG 360


>04_04_0256 +
           23974297-23974387,23974824-23974942,23975619-23976437,
           23976626-23976781,23976878-23977252
          Length = 519

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 390 HPPEHSSGXRNSVLLSFGNSIVLLLDHSCLLISNPSSVWCLKSSCLLG 247
           H P H  G   SV ++  +S   L++ +C +++N  S+ CL    + G
Sbjct: 414 HIPGHRHGHLKSVKITGFSSAKSLVELTCYILNNAVSLECLTLDTIYG 461


>05_07_0146 +
           28018236-28018580,28018670-28018777,28018984-28019148,
           28019269-28019736,28019823-28019936,28020038-28020715
          Length = 625

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +1

Query: 115 NFDHDKHIFTGHGGKQR--TKKEASEHTNH 198
           +FDH  H    HGG++R  +  EA  H +H
Sbjct: 275 HFDHHNHHHPIHGGRERGSSPAEADHHRHH 304


>12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110
          Length = 530

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 193 WCVQTLLSWCAAYHRG 146
           W ++ L  WCAA HRG
Sbjct: 192 WSLEQLNRWCAALHRG 207


>10_06_0172 + 11473892-11474896
          Length = 334

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 351 GRYCGYPRSVRVDARLRXRWNXLG 422
           G Y GYP +VRVDA     +N +G
Sbjct: 288 GAYPGYPGAVRVDAATGAGYNVVG 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,106,789
Number of Sequences: 37544
Number of extensions: 228686
Number of successful extensions: 478
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)