Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0703.Seq
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   3e-11
SB_24582| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.024
SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)                  32   0.39 
SB_19792| Best HMM Match : SspH (HMM E-Value=6.6)                      31   0.89 
SB_45529| Best HMM Match : DUF983 (HMM E-Value=0.48)                   29   2.1  
SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_52316| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=8)              29   3.6  
SB_58969| Best HMM Match : Avidin (HMM E-Value=3.7)                    28   6.3  
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      28   6.3  

>SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 29/59 (49%), Positives = 40/59 (67%)
 Frame = +1

Query: 85  EAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPXGHSRKIVTKLMNAEQTR 261
           E +FDEYDYYNFD  +++  G+  K R+K+EA  +TN F P GH RK++ K  N E+ R
Sbjct: 2   EPYFDEYDYYNFD--RNVVEGNTRKGRSKREACLNTNRFCPGGHERKVLEKYRNTEKNR 58


>SB_24582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 97  DEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPXGHS-RKIVTKLMNAEQTRR 264
           D+YD Y+FD   H   G   K ++KKEAS++ N     GHS RK    + + E  R+
Sbjct: 5   DKYDDYDFDERLH--EGGARKGKSKKEASQNKN-VSTQGHSERKAAEYIQHGEDKRK 58


>SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
          Length = 344

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = +1

Query: 160 QRTKKEASEHTNHFDPXGH----SRKIVTKLMNAEQTRRLQTPNTRWIADQ*TTMV*QKD 327
           ++TK++AS  TN      H    SRK  T     ++TR+LQ   TR   DQ T     +D
Sbjct: 119 RKTKRQASRKTNTSKRQDHYKHASRKTKTSQSQDQETRKLQDQKTRKPQDQKTGKPQDQD 178

Query: 328 Y*VAKRKEDA 357
              A+ ++++
Sbjct: 179 KEAARPRQES 188


>SB_19792| Best HMM Match : SspH (HMM E-Value=6.6)
          Length = 244

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +1

Query: 124 HDKHIFTGHGGKQRTKKEASEHTNHFDP----XGHSRKIVTKLMNAEQTRRLQT 273
           H   I+T H    +T +  ++H N+         H+ +I T L+N  QT R+ T
Sbjct: 45  HAARIYTNHVNDSQTARIYTQHVNYSQTARIYTQHAARIYTNLVNDSQTARIYT 98


>SB_45529| Best HMM Match : DUF983 (HMM E-Value=0.48)
          Length = 294

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 281 VFGV*SLLVCSAFMSFVTIFLECPXGSKWLVCSDASFLVRCLP 153
           +FG+  +LVC+AF  F+T  + C      L      FL+R +P
Sbjct: 80  LFGIFIILVCAAFGGFITTRVSCGVLPSLLGMLIVGFLLRNVP 122


>SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 73  VNMSEAFFDEYDYYNFDHDKHI 138
           V+  +AF+  +DYY F HD ++
Sbjct: 508 VSEGKAFYGSFDYYQFPHDSNL 529


>SB_52316| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=8)
          Length = 420

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 73  VNMSEAFFDEYDYYNFDHDKHI 138
           V+  +AF+  +DYY F HD ++
Sbjct: 66  VSEGKAFYGSFDYYQFPHDSNL 87


>SB_58969| Best HMM Match : Avidin (HMM E-Value=3.7)
          Length = 706

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 20/77 (25%), Positives = 34/77 (44%)
 Frame = +1

Query: 70  NVNMSEAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPXGHSRKIVTKLMNA 249
           +VN S+       + N     HI+T H    +T +  ++H N       +  I T+ ++ 
Sbjct: 150 HVNDSQTARIYTQHVNDSQTAHIYTQHVSDSQTARIYTQHVN----DSQTAHIYTQHVSD 205

Query: 250 EQTRRLQTPNTRWIADQ 300
            QT R+ T +T  I  Q
Sbjct: 206 SQTARIYTQHTARIYTQ 222


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = -3

Query: 263  LLVCSAFMSFVTIFLECPXGSKWLVCSDASFLVRCLP 153
            LL CS   SF    L C   S  L CS +SFL+ C P
Sbjct: 1198 LLPCSPSSSFS---LPCSPSSFLLPCSPSSFLLPCSP 1231


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,428,240
Number of Sequences: 59808
Number of extensions: 271904
Number of successful extensions: 564
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)